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Srrm3 serine/arginine repetitive matrix 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685890, updated on 30-Mar-2024

Summary

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Official Symbol
Srrm3provided by RGD
Official Full Name
serine/arginine repetitive matrix 3provided by RGD
Primary source
RGD:1587868
See related
Ensembl:ENSRNOG00000001439 AllianceGenome:RGD:1587868
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307391
Summary
Predicted to enable mRNA binding activity. Orthologous to human SRRM3 (serine/arginine repetitive matrix 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 59.8), Adrenal (RPKM 7.5) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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Location:
12q12
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (26445718..26515185, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (20808878..20878557, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (23855400..23925793, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S11, pseudogene 6 Neighboring gene heat shock protein family B (small) member 1 Neighboring gene uncharacterized LOC108352435 Neighboring gene malate dehydrogenase 2 Neighboring gene serine/threonine/tyrosine interacting-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277394.2 → NP_001264323.2  serine/arginine repetitive matrix protein 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    D3ZQH1
    Related
    ENSRNOP00000001957.7, ENSRNOT00000001957.8
    Conserved Domains (2) summary
    pfam15230
    Location:527 → 579
    SRRM_C; Serine/arginine repetitive matrix protein C-terminus
    cd21376
    Location:34 → 101
    cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    26445718..26515185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039089750.2 → XP_038945678.1  serine/arginine repetitive matrix protein 3 isoform X1

    Conserved Domains (2) summary
    pfam15230
    Location:527 → 572
    SRRM_C; Serine/arginine repetitive matrix protein C-terminus
    cd21376
    Location:34 → 101
    cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

  2. XM_063271657.1 → XP_063127727.1  serine/arginine repetitive matrix protein 3 isoform X2

  3. XM_039089753.2 → XP_038945681.1  serine/arginine repetitive matrix protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A8I6A836, A6J0A5
    Related
    ENSRNOP00000088438.1
    Conserved Domains (1) summary
    cd21376
    Location:34 → 101
    cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

  4. XM_039089752.2 → XP_038945680.1  serine/arginine repetitive matrix protein 3 isoform X3

    UniProtKB/TrEMBL
    A6J0A5
    Conserved Domains (1) summary
    cd21376
    Location:34 → 101
    cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

RNA

  1. XR_005491670.2 RNA Sequence

  2. XR_005491671.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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