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Zcchc9 zinc finger, CCHC domain containing 9 [ Mus musculus (house mouse) ]

Gene ID: 69085, updated on 5-Mar-2024

Summary

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Official Symbol
Zcchc9provided by MGI
Official Full Name
zinc finger, CCHC domain containing 9provided by MGI
Primary source
MGI:MGI:1916335
See related
Ensembl:ENSMUSG00000021621 AllianceGenome:MGI:1916335
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810019C21Rik
Summary
Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleolus and nucleoplasm. Orthologous to human ZCCHC9 (zinc finger CCHC-type containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 7.5), limb E14.5 (RPKM 6.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
13 C3; 13 47.43 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (91944652..91955824, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (91796519..91807718, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4833422C13 gene Neighboring gene predicted gene, 22778 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene STARR-seq mESC enhancer starr_35256 Neighboring gene STARR-positive B cell enhancer ABC_E5409 Neighboring gene STARR-positive B cell enhancer ABC_E4085 Neighboring gene STARR-seq mESC enhancer starr_35257 Neighboring gene STARR-seq mESC enhancer starr_35258 Neighboring gene creatine kinase, mitochondrial 2 Neighboring gene RAS protein-specific guanine nucleotide-releasing factor 2 Neighboring gene predicted gene, 46435

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger CCHC domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145453.2 → NP_663428.2  zinc finger CCHC domain-containing protein 9

    Status: VALIDATED

    Source sequence(s)
    BB291225, BB656071, BC024496
    Consensus CDS
    CCDS36742.1
    UniProtKB/Swiss-Prot
    E9QQ14, Q8R1J3, Q921T6
    Related
    ENSMUSP00000022121.7, ENSMUST00000022121.13
    Conserved Domains (1) summary
    PTZ00368
    Location:130 → 229
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    91944652..91955824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517361.5 → XP_006517424.1  zinc finger CCHC domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    Q8BRH8
    Conserved Domains (1) summary
    PTZ00368
    Location:130 → 211
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

  2. XM_017315591.3 → XP_017171080.1  zinc finger CCHC domain-containing protein 9 isoform X2

    Conserved Domains (1) summary
    PTZ00368
    Location:4 → 103
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RNA

  1. XR_003950474.2 RNA Sequence

  2. XR_004938065.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8R1J3.2 GenPept UniProtKB/Swiss-Prot:Q8R1J3

Gene LinkOut

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