Format

Send to:

Choose Destination

Ms4a6c membrane-spanning 4-domains, subfamily A, member 6C [ Rattus norvegicus (Norway rat) ]

Gene ID: 690930, updated on 30-Sep-2021

Summary

Official Symbol
Ms4a6cprovided by RGD
Official Full Name
membrane-spanning 4-domains, subfamily A, member 6Cprovided by RGD
Primary source
RGD:1589849
See related
EnsemblRapid:ENSRNOG00000030689
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 148.9), Thymus (RPKM 99.2) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Ms4a6c in Genome Data Viewer
Location:
1q43
Exon count:
10
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (208153504..208174721)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (227668494..227679008)

Chromosome 1 - NC_051336.1Genomic Context describing neighboring genes Neighboring gene hypothetical LOC100359806 Neighboring gene membrane-spanning 4-domains, subfamily A, member 4C Neighboring gene similar to Eukaryotic translation initiation factor 5 (eIF-5) Neighboring gene similar to membrane-spanning 4-domains, subfamily A, member 4C Neighboring gene membrane-spanning 4-domains, subfamily A, member 6B-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
membrane-spanning 4-domains subfamily A member 6C-like

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051336.1 Reference mRatBN7.2 Primary Assembly

    Range
    208153504..208174721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039101350.1XP_038957278.1  membrane-spanning 4-domains subfamily A member 6C-like isoform X4

    Related
    ENSRNOP00000066116.2, ENSRNOT00000074127.3
    Conserved Domains (1) summary
    pfam04103
    Location:47206
    CD20; CD20-like family
  2. XM_039101352.1XP_038957280.1  membrane-spanning 4-domains subfamily A member 6C-like isoform X5

    Conserved Domains (1) summary
    pfam04103
    Location:1153
    CD20; CD20-like family
  3. XM_039101353.1XP_038957281.1  membrane-spanning 4-domains subfamily A member 6C-like isoform X6

    Conserved Domains (1) summary
    pfam04103
    Location:66133
    CD20; CD20-like family
  4. XM_039101347.1XP_038957275.1  membrane-spanning 4-domains subfamily A member 6C-like isoform X1

    Conserved Domains (1) summary
    pfam04103
    Location:66225
    CD20; CD20-like family
  5. XM_039101349.1XP_038957277.1  membrane-spanning 4-domains subfamily A member 6C-like isoform X3

    Conserved Domains (1) summary
    pfam04103
    Location:66225
    CD20; CD20-like family
  6. XM_039101348.1XP_038957276.1  membrane-spanning 4-domains subfamily A member 6C-like isoform X2

    Related
    ENSRNOP00000035907.6, ENSRNOT00000032937.6
    Conserved Domains (1) summary
    pfam04103
    Location:66225
    CD20; CD20-like family
  7. XM_039101351.1XP_038957279.1  membrane-spanning 4-domains subfamily A member 6C-like isoform X5

    Conserved Domains (1) summary
    pfam04103
    Location:1153
    CD20; CD20-like family
Support Center