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Chaserr CHD2 adjacent suppressive regulatory RNA [ Mus musculus (house mouse) ]

Gene ID: 69170, updated on 23-Jun-2021

Summary

Official Symbol
Chaserrprovided by MGI
Official Full Name
CHD2 adjacent suppressive regulatory RNAprovided by MGI
Primary source
MGI:MGI:1916420
See related
Ensembl:ENSMUSG00000101970
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
linc2025; 1810026B05Rik
Expression
Ubiquitous expression in CNS E14 (RPKM 5.3), thymus adult (RPKM 5.2) and 28 other tissues See more
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Genomic context

See Chaserr in Genome Data Viewer
Location:
7; 7 D1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (73189546..73208143, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (73539798..73558395, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (80700038..80703409, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930429H19 gene Neighboring gene RIKEN cDNA A730056A06 gene Neighboring gene repulsive guidance molecule family member A Neighboring gene predicted gene 44758 Neighboring gene chromodomain helicase DNA binding protein 2 Neighboring gene CRISPRi-validated cis-regulatory element for Chaserr and Chd2 Neighboring gene predicted gene, 30149 Neighboring gene predicted gene, 39036 Neighboring gene predicted gene, 26176

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037569.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099699, AK140938, BU756652
    Related
    ENSMUST00000184587.5

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    73189546..73208143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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