TSEN34 tRNA splicing endonuclease subunit 34 [Macaca mulatta (Rhesus monkey)] - Gene

Summary

Official Symbol: TSEN34provided by VGNC
Official Full Name: tRNA splicing endonuclease subunit 34provided by VGNC
Primary source: VGNC:VGNC:78974
See related: Ensembl:ENSMMUG00000016571
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Macaca mulatta
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
103	current	Mmul_10 (GCF_003339765.1)	19	NC_041772.1 (53951304..53955195)
102	previous assembly	Mmul_8.0.1 (GCF_000772875.2)	19	NC_027911.1 (49537397..49541007)

Chromosome 19 - NC_041772.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

ECD15244 (e-PCR)
- UniSTS:296261

REN91879 (e-PCR)
- UniSTS:416677

G20833 (e-PCR)
- UniSTS:5546

A006I07 (e-PCR)
- UniSTS:5547

REN91885 (e-PCR)
- UniSTS:416683

REN91886 (e-PCR)
- UniSTS:416684

REN91887 (e-PCR)
- UniSTS:416685

REN91888 (e-PCR)
- UniSTS:416686

REN91889 (e-PCR)
- UniSTS:416687

REN91893 (e-PCR)
- UniSTS:416691

D19S1136 (e-PCR)
- UniSTS:79540

REN91896 (e-PCR)
- UniSTS:416694

ECD06115 (e-PCR)
- UniSTS:287177

stSG605860 (e-PCR)
- UniSTS:447990

stSG605862 (e-PCR)
- UniSTS:447991

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info	PubMed
enables tRNA-intron endonuclease activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in tRNA-type intron splice site recognition and cleavage	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of tRNA-intron endonuclease complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: tRNA-splicing endonuclease subunit Sen34

Names: tRNA splicing endonuclease 34 homolog

NP_001248694.1

EC 4.6.1.16

XP_014980287.1

EC 4.6.1.16

XP_028694180.1

EC 4.6.1.16

XP_028694181.1

EC 4.6.1.16

XP_028694182.1

EC 4.6.1.16

XP_028694183.1

EC 4.6.1.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001261765.1 → NP_001248694.1 tRNA-splicing endonuclease subunit Sen34

See identical proteins and their annotated locations for NP_001248694.1

Status: PROVISIONAL

Source sequence(s)

JV045026

UniProtKB/TrEMBL

A0A5F8AH26, F7H3C1

Related

ENSMMUP00000021773.2, ENSMMUT00000023272.4

Conserved Domains (1) summary

cd22363
Location:218 → 306

tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

NC_041772.1 Reference Mmul_10 Primary Assembly

Range

53951304..53955195

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_028838348.1 → XP_028694181.1 tRNA-splicing endonuclease subunit Sen34 isoform X2

UniProtKB/TrEMBL

A0A5F8AH26, F7H3C1

Related

ENSMMUP00000069169.1, ENSMMUT00000094550.1

Conserved Domains (1) summary

cd22363
Location:218 → 306

tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase
XM_028838347.1 → XP_028694180.1 tRNA-splicing endonuclease subunit Sen34 isoform X2

UniProtKB/TrEMBL

A0A5F8AH26, F7H3C1

Conserved Domains (1) summary

cd22363
Location:218 → 306

tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase
XM_015124801.2 → XP_014980287.1 tRNA-splicing endonuclease subunit Sen34 isoform X1

UniProtKB/TrEMBL

A0A5F8AH26

Related

ENSMMUP00000076706.1, ENSMMUT00000101452.1

Conserved Domains (2) summary

COG1676
Location:223 → 312

SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]

pfam01974
Location:220 → 304

tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain
XM_028838350.1 → XP_028694183.1 tRNA-splicing endonuclease subunit Sen34 isoform X2

UniProtKB/TrEMBL

A0A5F8AH26, F7H3C1

Conserved Domains (1) summary

cd22363
Location:218 → 306

tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase
XM_028838349.1 → XP_028694182.1 tRNA-splicing endonuclease subunit Sen34 isoform X2

UniProtKB/TrEMBL

A0A5F8AH26, F7H3C1

Related

ENSMMUP00000069182.1, ENSMMUT00000093253.1

Conserved Domains (1) summary

cd22363
Location:218 → 306

tRNA-intron_lyase_C; catalytic C-terminal domain of the tRNA-intron lyase