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PBX1 PBX homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 694416, updated on 5-Mar-2024

Summary

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Official Symbol
PBX1provided by VGNC
Official Full Name
PBX homeobox 1provided by VGNC
Primary source
VGNC:VGNC:75770
See related
Ensembl:ENSMMUG00000019108
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PBX1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (22042931..22373391)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (202773805..203104064, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene histone H3.3C-like Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene microRNA mir-7177 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L35a-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-B-cell leukemia transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    22042931..22373391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015125589.2 → XP_014981075.1  pre-B-cell leukemia transcription factor 1 isoform X4

    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  2. XM_028849923.1 → XP_028705756.1  pre-B-cell leukemia transcription factor 1 isoform X4

    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  3. XM_015125575.2 → XP_014981061.1  pre-B-cell leukemia transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    F6WM30, G7MF72, H9FV44
    Related
    ENSMMUP00000014901.3, ENSMMUT00000015900.4
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  4. XM_028849909.1 → XP_028705742.1  pre-B-cell leukemia transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    F6WM30, G7MF72, H9FV44
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  5. XM_015125583.2 → XP_014981069.1  pre-B-cell leukemia transcription factor 1 isoform X2

    UniProtKB/TrEMBL
    G7MF72
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  6. XM_015125593.2 → XP_014981079.1  pre-B-cell leukemia transcription factor 1 isoform X4

    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  7. XM_028849918.1 → XP_028705751.1  pre-B-cell leukemia transcription factor 1 isoform X3

    UniProtKB/TrEMBL
    G7MF72
    Conserved Domains (2) summary
    cd00086
    Location:205 → 265
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:57 → 203
    PBC; PBC domain
Nucleotide Protein
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