Format

Send to:

Choose Destination

Trnp1 TMF1-regulated nuclear protein 1 [ Mus musculus (house mouse) ]

Gene ID: 69539, updated on 23-Jun-2021

Summary

Official Symbol
Trnp1provided by MGI
Official Full Name
TMF1-regulated nuclear protein 1provided by MGI
Primary source
MGI:MGI:1916789
See related
Ensembl:ENSMUSG00000056596
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Trnp; 2300002D11Rik
Expression
Biased expression in cerebellum adult (RPKM 22.7), frontal lobe adult (RPKM 21.3) and 13 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Trnp1 in Genome Data Viewer
Location:
4; 4 D2.3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (133218408..133226446, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (133491097..133499645, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (133047015..133054465, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 42322 Neighboring gene predicted gene 13257 Neighboring gene terminal nucleotidyltransferase 5B Neighboring gene predicted gene, 42323 Neighboring gene keratinocyte differentiation factor 1 Neighboring gene nudC nuclear distribution protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Clone Names

  • MGC57108

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
colocalizes_with euchromatin IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
TMF-regulated nuclear protein 1
Names
mexneurin

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081156.2NP_001074625.1  TMF-regulated nuclear protein 1

    See identical proteins and their annotated locations for NP_001074625.1

    Status: VALIDATED

    Source sequence(s)
    AW120970, BB579578, BC049168
    Consensus CDS
    CCDS38904.1
    UniProtKB/Swiss-Prot
    Q80ZI1
    Related
    ENSMUSP00000129613.2, ENSMUST00000125541.2
    Conserved Domains (1) summary
    cl22856
    Location:106167
    SNARE; SNARE motif

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    133218408..133226446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006539155.4XP_006539218.1  TMF-regulated nuclear protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006539218.1

    UniProtKB/Swiss-Prot
    Q80ZI1
    Conserved Domains (1) summary
    cl22856
    Location:106167
    SNARE; SNARE motif
Support Center