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Odam odontogenic, ameloblast asssociated [ Mus musculus (house mouse) ]

Gene ID: 69592, updated on 23-Jun-2021

Summary

Official Symbol
Odamprovided by MGI
Official Full Name
odontogenic, ameloblast asssociatedprovided by MGI
Primary source
MGI:MGI:1916842
See related
Ensembl:ENSMUSG00000009580
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
APIN; 2310011G06Rik
Expression
Restricted expression toward genital fat pad adult (RPKM 10.5) See more
Orthologs
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Genomic context

See Odam in Genome Data Viewer
Location:
5 E1; 5 43.56 cM
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (88032869..88042668)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (87885010..87894809)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (88314720..88321770)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene proline rich 27 Neighboring gene DAZ interacting protein 1 pseudogene Neighboring gene RIKEN cDNA 1700066N21 gene Neighboring gene cDNA sequence BC037156 Neighboring gene casein kappa

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cell periphery ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in mitotic spindle ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in supramolecular fiber ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
odontogenic ameloblast-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027128.3NP_081404.2  odontogenic ameloblast-associated protein precursor

    See identical proteins and their annotated locations for NP_081404.2

    Status: VALIDATED

    Source sequence(s)
    AC022298
    Consensus CDS
    CCDS19394.2
    UniProtKB/Swiss-Prot
    A1E960
    Related
    ENSMUSP00000117898.3, ENSMUST00000129757.9
    Conserved Domains (1) summary
    pfam15424
    Location:16273
    ODAM; Odontogenic ameloblast-associated family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    88032869..88042668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535209.3XP_006535272.1  odontogenic ameloblast-associated protein isoform X1

    Conserved Domains (1) summary
    pfam15424
    Location:16286
    ODAM; Odontogenic ameloblast-associated family
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