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Tatdn1 TatD DNase domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 69694, updated on 23-Jun-2021

Summary

Official Symbol
Tatdn1provided by MGI
Official Full Name
TatD DNase domain containing 1provided by MGI
Primary source
MGI:MGI:1916944
See related
Ensembl:ENSMUSG00000050891
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CDA1; CDA11; 2310079P03Rik
Expression
Broad expression in testis adult (RPKM 4.9), liver E14 (RPKM 4.4) and 21 other tissues See more
Orthologs
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Genomic context

See Tatdn1 in Genome Data Viewer
Location:
15; 15 D1
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (58762002..58805605, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (58890153..58933756, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (58721708..58765285, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 12 Neighboring gene predicted gene, 36509 Neighboring gene ring finger protein 139 Neighboring gene NADH:ubiquinone oxidoreductase subunit B9 Neighboring gene MTSS I-BAR domain containing 1 Neighboring gene RIKEN cDNA 4930544F09 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables 3'-5'-exodeoxyribonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
putative deoxyribonuclease TATDN1
NP_001355357.1
NP_001355557.1
NP_001355558.1
NP_001355559.1
NP_001355560.1
NP_001355561.1
NP_001355562.1
NP_001355563.1
NP_001355564.1
NP_001355565.1
NP_780360.1
XP_006521429.1
XP_006521430.1
XP_006521437.1
XP_030104616.1
XP_030104617.1
XP_030104618.1
XP_030104619.1
XP_030104621.1
XP_036015463.1
XP_036015464.1
XP_036015465.1
XP_036015466.1
XP_036015467.1
XP_036015468.1
XP_036015469.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368428.1NP_001355357.1  putative deoxyribonuclease TATDN1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Consensus CDS
    CCDS88768.1
    Related
    ENSMUSP00000154677.2, ENSMUST00000228538.3
    Conserved Domains (1) summary
    cd01310
    Location:6294
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  2. NM_001368628.1NP_001355557.1  putative deoxyribonuclease TATDN1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cd01310
    Location:1247
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  3. NM_001368629.1NP_001355558.1  putative deoxyribonuclease TATDN1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  4. NM_001368630.1NP_001355559.1  putative deoxyribonuclease TATDN1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  5. NM_001368631.1NP_001355560.1  putative deoxyribonuclease TATDN1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  6. NM_001368632.1NP_001355561.1  putative deoxyribonuclease TATDN1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  7. NM_001368633.1NP_001355562.1  putative deoxyribonuclease TATDN1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  8. NM_001368634.1NP_001355563.1  putative deoxyribonuclease TATDN1 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cd01310
    Location:6226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  9. NM_001368635.1NP_001355564.1  putative deoxyribonuclease TATDN1 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cl00281
    Location:1179
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
  10. NM_001368636.1NP_001355565.1  putative deoxyribonuclease TATDN1 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Conserved Domains (1) summary
    cl00281
    Location:3158
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
  11. NM_175151.5NP_780360.1  putative deoxyribonuclease TATDN1 isoform 2

    See identical proteins and their annotated locations for NP_780360.1

    Status: VALIDATED

    Source sequence(s)
    AC158777
    Consensus CDS
    CCDS37082.1
    UniProtKB/Swiss-Prot
    Q6P8M1
    UniProtKB/TrEMBL
    A0A0R4J1E8
    Related
    ENSMUSP00000105783.2, ENSMUST00000110155.3
    Conserved Domains (1) summary
    cd01310
    Location:6263
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    58762002..58805605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521367.4XP_006521430.1  putative deoxyribonuclease TATDN1 isoform X2

    Conserved Domains (1) summary
    cd01310
    Location:13278
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  2. XM_036159570.1XP_036015463.1  putative deoxyribonuclease TATDN1 isoform X2

    Conserved Domains (1) summary
    cd01310
    Location:13278
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  3. XM_036159576.1XP_036015469.1  putative deoxyribonuclease TATDN1 isoform X6

    Conserved Domains (1) summary
    cl00281
    Location:3158
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
  4. XM_030248756.2XP_030104616.1  putative deoxyribonuclease TATDN1 isoform X3

    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  5. XM_030248761.2XP_030104621.1  putative deoxyribonuclease TATDN1 isoform X6

    Conserved Domains (1) summary
    cl00281
    Location:3158
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
  6. XM_030248757.2XP_030104617.1  putative deoxyribonuclease TATDN1 isoform X3

    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  7. XM_030248759.2XP_030104619.1  putative deoxyribonuclease TATDN1 isoform X5

    Conserved Domains (1) summary
    cl00281
    Location:1179
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
  8. XM_036159575.1XP_036015468.1  putative deoxyribonuclease TATDN1 isoform X6

    Conserved Domains (1) summary
    cl00281
    Location:3158
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
  9. XM_036159571.1XP_036015464.1  putative deoxyribonuclease TATDN1 isoform X3

    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  10. XM_036159574.1XP_036015467.1  putative deoxyribonuclease TATDN1 isoform X6

    Conserved Domains (1) summary
    cl00281
    Location:3158
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
  11. XM_036159573.1XP_036015466.1  putative deoxyribonuclease TATDN1 isoform X3

    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  12. XM_006521374.2XP_006521437.1  putative deoxyribonuclease TATDN1 isoform X3

    See identical proteins and their annotated locations for XP_006521437.1

    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  13. XM_036159572.1XP_036015465.1  putative deoxyribonuclease TATDN1 isoform X3

    Conserved Domains (1) summary
    cd01310
    Location:3226
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
  14. XM_030248758.1XP_030104618.1  putative deoxyribonuclease TATDN1 isoform X4

    Conserved Domains (1) summary
    cl00281
    Location:6195
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
  15. XM_006521366.4XP_006521429.1  putative deoxyribonuclease TATDN1 isoform X1

    Conserved Domains (1) summary
    cd01310
    Location:6263
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

RNA

  1. XR_003951437.2 RNA Sequence

  2. XR_004938870.1 RNA Sequence

    Related
    ENSMUST00000227540.2
  3. XR_003951436.1 RNA Sequence

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