U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC698874 protocadherin alpha-C2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 698874, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC698874
Gene description
protocadherin alpha-C2
See related
Ensembl:ENSMMUG00000014571
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
PCDHA9
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (138171101..138392265)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (138564960..138568442)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene histidyl-tRNA synthetase 1 Neighboring gene histidyl-tRNA synthetase 2, mitochondrial Neighboring gene zinc finger matrin-type 2 Neighboring gene protocadherin alpha-8 pseudogene Neighboring gene protocadherin alpha 5 Neighboring gene protocadherin alpha-4-like Neighboring gene uncharacterized LOC106998968 Neighboring gene protocadherin beta 1 Neighboring gene protocadherin beta 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protocadherin alpha-1; protocadherin alpha-10; protocadherin alpha-11; protocadherin alpha-12; protocadherin alpha-13; protocadherin alpha-2; protocadherin alpha-3; protocadherin alpha-4; protocadherin alpha-6; protocadherin alpha-7; protocadherin alpha-9; protocadherin alpha-C1; protocadherin alpha-C2
Names
protocadherin alpha 13
protocadherin alpha 3
protocadherin alpha 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    138171101..138392265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028849770.1 → XP_028705603.1  protocadherin alpha-1 isoform X9

    UniProtKB/TrEMBL
    A0A1D5QGI5
    Related
    ENSMMUP00000047155.2, ENSMMUT00000066932.2
    Conserved Domains (3) summary
    cd11304
    Location:246 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:800 → 942
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  2. XM_028849773.1 → XP_028705606.1  protocadherin alpha-2 isoform X12

    UniProtKB/TrEMBL
    G7MUZ5
    Conserved Domains (3) summary
    cd11304
    Location:246 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:798 → 940
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  3. XM_028849781.1 → XP_028705614.1  protocadherin alpha-3 isoform X20

    Conserved Domains (2) summary
    cd11304
    Location:248 → 348
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:33 → 113
    Cadherin_2; Cadherin-like

  4. XM_028849768.1 → XP_028705601.1  protocadherin alpha-3 isoform X7

    UniProtKB/TrEMBL
    F7HTN0
    Related
    ENSMMUP00000015981.4, ENSMMUT00000017066.4
    Conserved Domains (3) summary
    cd11304
    Location:248 → 348
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:802 → 944
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:33 → 113
    Cadherin_2; Cadherin-like

  5. XM_028849779.1 → XP_028705612.1  protocadherin alpha-4 isoform X18

    UniProtKB/TrEMBL
    G7MUZ6
    Conserved Domains (4) summary
    cd11304
    Location:247 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:157 → 240
    CA; Cadherin repeats
    pfam15974
    Location:797 → 878
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  6. XM_028849774.1 → XP_028705607.1  protocadherin alpha-4 isoform X13

    UniProtKB/TrEMBL
    G7MUZ6
    Conserved Domains (4) summary
    cd11304
    Location:247 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:157 → 240
    CA; Cadherin repeats
    pfam15974
    Location:797 → 939
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  7. XM_028849766.1 → XP_028705599.1  protocadherin alpha-6 isoform X6

    UniProtKB/TrEMBL
    A0A1D5QNY8
    Related
    ENSMMUP00000049765.2, ENSMMUT00000071492.2
    Conserved Domains (3) summary
    cd11304
    Location:255 → 355
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:808 → 950
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:40 → 120
    Cadherin_2; Cadherin-like

  8. XM_028849780.1 → XP_028705613.1  protocadherin alpha-7 isoform X19

    UniProtKB/TrEMBL
    G7MUZ8
    Conserved Domains (2) summary
    cd11304
    Location:247 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  9. XM_028849775.1 → XP_028705608.1  protocadherin alpha-7 isoform X14

    UniProtKB/TrEMBL
    A0A1D5RDF3
    Conserved Domains (3) summary
    cd11304
    Location:247 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:787 → 929
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  10. XM_028849769.1 → XP_028705602.1  protocadherin alpha-9 isoform X8

    UniProtKB/TrEMBL
    A0A1D5RDF3
    Related
    ENSMMUP00000058346.2, ENSMMUT00000063066.2
    Conserved Domains (3) summary
    cd11304
    Location:247 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:800 → 942
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  11. XM_028849765.1 → XP_028705598.1  protocadherin alpha-10 isoform X5

    UniProtKB/TrEMBL
    F7GRQ8
    Related
    ENSMMUP00000019135.3, ENSMMUT00000020444.4
    Conserved Domains (3) summary
    cd11304
    Location:458 → 560
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:808 → 950
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:30 → 110
    Cadherin_2; Cadherin-like

  12. XM_028849778.1 → XP_028705611.1  protocadherin alpha-11 isoform X17

    Conserved Domains (3) summary
    cd11304
    Location:246 → 345
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:799 → 880
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  13. XM_028849772.1 → XP_028705605.1  protocadherin alpha-11 isoform X11

    UniProtKB/TrEMBL
    A0A5F8AAP6
    Related
    ENSMMUP00000074945.1, ENSMMUT00000109750.1
    Conserved Domains (3) summary
    cd11304
    Location:246 → 345
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:799 → 941
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  14. XM_028849762.1 → XP_028705595.1  protocadherin alpha-12 isoform X2

    UniProtKB/TrEMBL
    F7GT06
    Related
    ENSMMUP00000019126.4, ENSMMUT00000020434.4
    Conserved Domains (3) summary
    cd11304
    Location:278 → 378
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:823 → 965
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:63 → 143
    Cadherin_2; Cadherin-like

  15. XM_028849771.1 → XP_028705604.1  protocadherin alpha-13 isoform X10

    UniProtKB/TrEMBL
    F6UY24
    Related
    ENSMMUP00000033997.3, ENSMMUT00000040969.3
    Conserved Domains (3) summary
    cd11304
    Location:246 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:799 → 941
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:31 → 111
    Cadherin_2; Cadherin-like

  16. XM_028849777.1 → XP_028705610.1  protocadherin alpha-C1 isoform X16

    UniProtKB/TrEMBL
    F7GSV5
    Related
    ENSMMUP00000019133.3, ENSMMUT00000020442.4
    Conserved Domains (3) summary
    cd11304
    Location:451 → 551
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:813 → 894
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:22 → 103
    Cadherin_2; Cadherin-like

  17. XM_028849763.1 → XP_028705596.1  protocadherin alpha-C1 isoform X3

    Conserved Domains (3) summary
    cd11304
    Location:449 → 551
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:813 → 955
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:22 → 103
    Cadherin_2; Cadherin-like

  18. XM_028849776.1 → XP_028705609.1  protocadherin alpha-C2 isoform X15

    UniProtKB/TrEMBL
    H9FIK5
    Conserved Domains (4) summary
    cd11304
    Location:261 → 361
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:857 → 907
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:44 → 127
    Cadherin_2; Cadherin-like
    pfam16492
    Location:703 → 810
    Cadherin_C_2; Cadherin cytoplasmic C-terminal

  19. XM_028849764.1 → XP_028705597.1  protocadherin alpha-C2 isoform X4

    UniProtKB/TrEMBL
    G7MV00
    Conserved Domains (4) summary
    cd11304
    Location:261 → 361
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:857 → 938
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:44 → 127
    Cadherin_2; Cadherin-like
    pfam16492
    Location:703 → 810
    Cadherin_C_2; Cadherin cytoplasmic C-terminal

  20. XM_028849761.1 → XP_028705594.1  protocadherin alpha-C2 isoform X1

    UniProtKB/TrEMBL
    F7GSV9, G7MV00
    Related
    ENSMMUP00000019132.4, ENSMMUT00000020441.4
    Conserved Domains (4) summary
    cd11304
    Location:261 → 361
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:857 → 999
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam08266
    Location:44 → 127
    Cadherin_2; Cadherin-like
    pfam16492
    Location:703 → 810
    Cadherin_C_2; Cadherin cytoplasmic C-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.