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Sdr9c7 4short chain dehydrogenase/reductase family 9C, member 7 [ Mus musculus (house mouse) ]

Gene ID: 70061, updated on 23-Jun-2021

Summary

Official Symbol
Sdr9c7provided by MGI
Official Full Name
4short chain dehydrogenase/reductase family 9C, member 7provided by MGI
Primary source
MGI:MGI:1917311
See related
Ensembl:ENSMUSG00000040127
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
S; Rd; SD; Rdh2; Rdhs; Sdro; Rdh20; SDR-O; 1810054F20Rik
Expression
Biased expression in liver adult (RPKM 5.3), stomach adult (RPKM 2.3) and 2 other tissues See more
Orthologs
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Genomic context

See Sdr9c7 in Genome Data Viewer
Location:
10; 10 D3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127734404..127747630)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127898535..127911761)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127335591..127348817)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RDH16 family member 2 Neighboring gene predicted gene, 31091 Neighboring gene retinol dehydrogenase 7 Neighboring gene predicted gene, 40804 Neighboring gene predicted gene, 40805 Neighboring gene ecotropic viral integration site 5 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables NAD-retinol dehydrogenase activity ISO
Inferred from Sequence Orthology
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
short-chain dehydrogenase/reductase family 9C member 7
Names
RDH-S
orphan short chain dehydrogenase/reductase
retinol dehydrogenase 20
NP_081577.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027301.3NP_081577.1  short-chain dehydrogenase/reductase family 9C member 7

    See identical proteins and their annotated locations for NP_081577.1

    Status: VALIDATED

    Source sequence(s)
    BC064820
    Consensus CDS
    CCDS24256.1
    UniProtKB/Swiss-Prot
    Q8K3P0
    Related
    ENSMUSP00000036628.8, ENSMUST00000047134.8
    Conserved Domains (2) summary
    cd09805
    Location:26302
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    pfam00106
    Location:26207
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    127734404..127747630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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