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LMO3 LIM domain only 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 701893, updated on 5-Mar-2024

Summary

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Official Symbol
LMO3provided by VGNC
Official Full Name
LIM domain only 3provided by VGNC
Primary source
VGNC:VGNC:100072
Locus tag
EGK_03435
See related
Ensembl:ENSMMUG00000040307
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (17975918..18038299, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (17304577..17366981, complement)

Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene microsomal glutathione S-transferase 1 Neighboring gene uncharacterized LOC107000782 Neighboring gene aspartate aminotransferase, mitochondrial-like Neighboring gene uncharacterized LOC107000784 Neighboring gene RNA-binding protein with serine-rich domain 1 pseudogene Neighboring gene uncharacterized LOC107000785

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM domain only protein 3
Names
LIM domain only 3 (rhombotin-like 2)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266306.1 → NP_001253235.1  LIM domain only protein 3

    See identical proteins and their annotated locations for NP_001253235.1

    Status: PROVISIONAL

    Source sequence(s)
    JU319745
    UniProtKB/TrEMBL
    H9EM92
    Related
    ENSMMUP00000072061.1, ENSMMUT00000092153.1
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041764.1 Reference Mmul_10 Primary Assembly

    Range
    17975918..18038299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015151108.2 → XP_015006594.1  LIM domain only protein 3 isoform X3

    UniProtKB/TrEMBL
    H9EM92
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  2. XM_015151103.2 → XP_015006589.1  LIM domain only protein 3 isoform X1

    UniProtKB/TrEMBL
    F6S340
    Related
    ENSMMUP00000025374.4, ENSMMUT00000027125.4
    Conserved Domains (2) summary
    cd09388
    Location:55 → 109
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:119 → 173
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  3. XM_015151105.2 → XP_015006591.1  LIM domain only protein 3 isoform X3

    UniProtKB/TrEMBL
    H9EM92
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  4. XM_015151106.2 → XP_015006592.1  LIM domain only protein 3 isoform X3

    UniProtKB/TrEMBL
    H9EM92
    Related
    ENSMMUP00000019682.4, ENSMMUT00000021052.4
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  5. XM_015151107.2 → XP_015006593.1  LIM domain only protein 3 isoform X3

    UniProtKB/TrEMBL
    H9EM92
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  6. XM_028828848.1 → XP_028684681.1  LIM domain only protein 3 isoform X3

    UniProtKB/TrEMBL
    H9EM92
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  7. XM_015151104.2 → XP_015006590.1  LIM domain only protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5QJ35, A0A663DD10, A0A8J8XM88, F6YLE0
    Related
    ENSMMUP00000048057.2, ENSMMUT00000056345.2
    Conserved Domains (2) summary
    cd09388
    Location:24 → 78
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:88 → 142
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  8. XM_028828849.1 → XP_028684682.1  LIM domain only protein 3 isoform X4

    Conserved Domains (1) summary
    cd09388
    Location:55 → 109
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
Nucleotide Protein
Heading Accession and Version

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