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Tmtc4 transmembrane and tetratricopeptide repeat containing 4 [ Mus musculus (house mouse) ]

Gene ID: 70551, updated on 23-Jun-2021

Summary

Official Symbol
Tmtc4provided by MGI
Official Full Name
transmembrane and tetratricopeptide repeat containing 4provided by MGI
Primary source
MGI:MGI:1921050
See related
Ensembl:ENSMUSG00000041594
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930403J22Rik; 5730419O14Rik
Expression
Ubiquitous expression in whole brain E14.5 (RPKM 6.0), CNS E11.5 (RPKM 5.9) and 28 other tissues See more
Orthologs
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Genomic context

See Tmtc4 in Genome Data Viewer
Location:
14; 14 E5
Exon count:
21
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (123156383..123220697, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (122918971..122983285, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (123318197..123382483, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene propionyl-Coenzyme A carboxylase, alpha polypeptide Neighboring gene predicted gene, 53848 Neighboring gene RIKEN cDNA 4930594M22 gene Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene predicted gene, 46488 Neighboring gene U7 small nuclear RNA Neighboring gene expressed sequence AA536875

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

General protein information

Preferred Names
protein O-mannosyl-transferase TMTC4
Names
transmembrane and TPR repeat-containing protein 4
NP_001347527.1
NP_001347528.1
NP_082927.1
XP_006519573.1
XP_006519574.1
XP_017171671.1
XP_017171672.1
XP_017171674.1
XP_030103863.1
XP_030103864.1
XP_030103865.1
XP_030103866.1
XP_030103867.1
XP_030103868.1
XP_030103869.1
XP_030103870.1
XP_030103872.1
XP_036014738.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360598.1NP_001347527.1  protein O-mannosyl-transferase TMTC4

    Status: VALIDATED

    Source sequence(s)
    AK033947, AK049748, BX512100, BY125796
    Consensus CDS
    CCDS27352.1
    Conserved Domains (3) summary
    COG0457
    Location:481717
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:482510
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292366
    DUF1736; Domain of unknown function (DUF1736)
  2. NM_001360599.1NP_001347528.1  protein O-mannosyl-transferase TMTC4

    Status: VALIDATED

    Source sequence(s)
    AK033947, AK043293, BB852647, BX512100
    Consensus CDS
    CCDS27352.1
    Related
    ENSMUSP00000121523.2, ENSMUST00000148661.2
    Conserved Domains (3) summary
    COG0457
    Location:481717
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:482510
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292366
    DUF1736; Domain of unknown function (DUF1736)
  3. NM_028651.3NP_082927.1  protein O-mannosyl-transferase TMTC4

    See identical proteins and their annotated locations for NP_082927.1

    Status: VALIDATED

    Source sequence(s)
    AK033947, BX512100, BY125796
    Consensus CDS
    CCDS27352.1
    UniProtKB/Swiss-Prot
    Q8BG19
    Related
    ENSMUSP00000046368.8, ENSMUST00000037726.14
    Conserved Domains (3) summary
    COG0457
    Location:481717
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:482510
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292366
    DUF1736; Domain of unknown function (DUF1736)

RNA

  1. NR_153663.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK036741, BX512100, BY125796
    Related
    ENSMUST00000143189.8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    123156383..123220697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030248003.2XP_030103863.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:480716
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:481509
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:291365
    DUF1736; Domain of unknown function (DUF1736)
  2. XM_030248004.2XP_030103864.1  protein O-mannosyl-transferase TMTC4 isoform X4

    Conserved Domains (3) summary
    COG0457
    Location:360596
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:361389
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:171245
    DUF1736; Domain of unknown function (DUF1736)
  3. XM_017316183.1XP_017171672.1  protein O-mannosyl-transferase TMTC4 isoform X3

    UniProtKB/Swiss-Prot
    Q8BG19
    Conserved Domains (3) summary
    COG0457
    Location:361597
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:362390
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:172246
    DUF1736; Domain of unknown function (DUF1736)
  4. XM_036158845.1XP_036014738.1  protein O-mannosyl-transferase TMTC4 isoform X6

    Conserved Domains (3) summary
    TIGR02917
    Location:181455
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:220248
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:32104
    DUF1736; Domain of unknown function (DUF1736)
  5. XM_030248009.2XP_030103869.1  protein O-mannosyl-transferase TMTC4 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:226500
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:265293
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:75149
    DUF1736; Domain of unknown function (DUF1736)
  6. XM_006519511.5XP_006519574.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:480716
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:481509
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:291365
    DUF1736; Domain of unknown function (DUF1736)
  7. XM_030248005.2XP_030103865.1  protein O-mannosyl-transferase TMTC4 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:226500
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:265293
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:75149
    DUF1736; Domain of unknown function (DUF1736)
  8. XM_017316185.3XP_017171674.1  protein O-mannosyl-transferase TMTC4 isoform X6

    Conserved Domains (3) summary
    TIGR02917
    Location:181455
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:220248
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:32104
    DUF1736; Domain of unknown function (DUF1736)
  9. XM_030248012.2XP_030103872.1  protein O-mannosyl-transferase TMTC4 isoform X6

    Conserved Domains (3) summary
    TIGR02917
    Location:181455
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:220248
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:32104
    DUF1736; Domain of unknown function (DUF1736)
  10. XM_030248010.2XP_030103870.1  protein O-mannosyl-transferase TMTC4 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:226500
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:265293
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:75149
    DUF1736; Domain of unknown function (DUF1736)
  11. XM_030248006.2XP_030103866.1  protein O-mannosyl-transferase TMTC4 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:226500
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:265293
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:75149
    DUF1736; Domain of unknown function (DUF1736)
  12. XM_030248007.2XP_030103867.1  protein O-mannosyl-transferase TMTC4 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:226500
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:265293
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:75149
    DUF1736; Domain of unknown function (DUF1736)
  13. XM_017316182.3XP_017171671.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:480716
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:481509
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:291365
    DUF1736; Domain of unknown function (DUF1736)
  14. XM_030248008.2XP_030103868.1  protein O-mannosyl-transferase TMTC4 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:226500
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:265293
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:75149
    DUF1736; Domain of unknown function (DUF1736)
  15. XM_006519510.3XP_006519573.1  protein O-mannosyl-transferase TMTC4 isoform X1

    See identical proteins and their annotated locations for XP_006519573.1

    UniProtKB/Swiss-Prot
    Q8BG19
    Related
    ENSMUSP00000116379.2, ENSMUST00000126867.8
    Conserved Domains (3) summary
    COG0457
    Location:481717
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:482510
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292366
    DUF1736; Domain of unknown function (DUF1736)
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