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TRIM27 tripartite motif containing 27 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 706129, updated on 5-Mar-2024

Summary

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Official Symbol
TRIM27provided by VGNC
Official Full Name
tripartite motif containing 27provided by VGNC
Primary source
VGNC:VGNC:81596
Locus tag
EGK_14629
See related
Ensembl:ENSMMUG00000015961
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
RFP
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (141323295..141346964)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (29367389..29391046, complement)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106997829 Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene transfer RNA arginine (anticodon CCG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of viral transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein RFP
Names
ret finger protein
NP_001247721.1
XP_014991123.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260792.1 → NP_001247721.1  zinc finger protein RFP

    See identical proteins and their annotated locations for NP_001247721.1

    Status: PROVISIONAL

    Source sequence(s)
    JV047842
    UniProtKB/TrEMBL
    A0A1D5Q9P9, A0A1D5QSL3, A0A8J8XF49, F7DCK3, G7MRB9
    Related
    ENSMMUP00000051041.2, ENSMMUT00000074369.2
    Conserved Domains (4) summary
    COG1196
    Location:140 → 312
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15814
    Location:315 → 491
    SPRY_PRY_TRIM27; PRY/SPRY domain in tripartite motif-containing protein 27 (TRIM27), also known as RING finger protein 76 (RNF76)
    cd16594
    Location:13 → 57
    RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
    cd19762
    Location:94 → 137
    Bbox2_TRIM7-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM7, TRIM27 and similar proteins

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    141323295..141346964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015135637.2 → XP_014991123.1  zinc finger protein RFP isoform X1

    UniProtKB/TrEMBL
    A0A1D5Q9P9
    Conserved Domains (3) summary
    cd00021
    Location:95 → 132
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00162
    Location:15 → 60
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl02614
    Location:238 → 414
    SPRY; SPRY domain
Nucleotide Protein
Heading Accession and Version

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