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Sugp1 SURP and G patch domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 70616, updated on 23-Jun-2021

Summary

Official Symbol
Sugp1provided by MGI
Official Full Name
SURP and G patch domain containing 1provided by MGI
Primary source
MGI:MGI:1917866
See related
Ensembl:ENSMUSG00000011306
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sf; Sf4; 5730496N02Rik
Expression
Ubiquitous expression in testis adult (RPKM 15.9), CNS E14 (RPKM 11.1) and 28 other tissues See more
Orthologs
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Genomic context

See Sugp1 in Genome Data Viewer
Location:
8; 8 B3.3
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (70495435..70524997)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (70042769..70072347)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (72566712..72595852)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene nucleoside diphosphate kinase B pseudogene Neighboring gene MAU2 sister chromatid cohesion factor Neighboring gene transmembrane 6 superfamily member 2 Neighboring gene hyaluronan and proteoglycan link protein 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
SURP and G-patch domain-containing protein 1
Names
splicing factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368391.1NP_001355320.1  SURP and G-patch domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC167132
    Consensus CDS
    CCDS22356.1
  2. NM_027481.3NP_081757.1  SURP and G-patch domain-containing protein 1

    See identical proteins and their annotated locations for NP_081757.1

    Status: VALIDATED

    Source sequence(s)
    AC167132
    Consensus CDS
    CCDS22356.1
    UniProtKB/Swiss-Prot
    Q8CH02
    Related
    ENSMUSP00000011450.7, ENSMUST00000011450.8
    Conserved Domains (2) summary
    pfam01585
    Location:561605
    G-patch; G-patch domain
    pfam01805
    Location:186237
    Surp; Surp module

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    70495435..70524997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243755.2XP_030099615.1  SURP and G-patch domain-containing protein 1 isoform X1

    Conserved Domains (3) summary
    PRK12270
    Location:335458
    kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit
    pfam01585
    Location:603645
    G-patch; G-patch domain
    pfam01805
    Location:227278
    Surp; Surp module
  2. XM_036154283.1XP_036010176.1  SURP and G-patch domain-containing protein 1 isoform X2

    Conserved Domains (3) summary
    PRK12270
    Location:87210
    kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit
    pfam01585
    Location:355399
    G-patch; G-patch domain
    pfam01805
    Location:55106
    Surp; Surp module
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