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Fam47c family with sequence similarity 47, member C [ Mus musculus (house mouse) ]

Gene ID: 70864, updated on 11-Apr-2024

Summary

Official Symbol
Fam47cprovided by MGI
Official Full Name
family with sequence similarity 47, member Cprovided by MGI
Primary source
MGI:MGI:1918114
See related
Ensembl:ENSMUSG00000078315 AllianceGenome:MGI:1918114
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam47a; Fam47a-ps; 4921509A18Rik
Summary
Orthologous to several human genes including FAM47C (family with sequence similarity 47 member C). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
X B; X 38.35 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (77781369..77783016)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (78737763..78739410)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ring finger protein 41 pseudogene Neighboring gene actin, beta pseudogene Neighboring gene STARR-seq mESC enhancer starr_47427 Neighboring gene STARR-seq mESC enhancer starr_47428 Neighboring gene SET domain-containing protein 8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47429 Neighboring gene STARR-seq mESC enhancer starr_47430 Neighboring gene STARR-seq mESC enhancer starr_47431 Neighboring gene zinc finger CCCH-type containing 18 pseudogene

Genomic regions, transcripts, and products

General gene information

Markers

Clone Names

  • MGC144831

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in transcription initiation-coupled chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
part_of chromatin IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC70864
Names
family with sequence similarity 47, member A, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164739.1NP_001158211.1  uncharacterized protein LOC70864

    See identical proteins and their annotated locations for NP_001158211.1

    Status: VALIDATED

    Source sequence(s)
    AL671900
    Consensus CDS
    CCDS59771.1
    UniProtKB/TrEMBL
    Q14BE7
    Related
    ENSMUSP00000137737.2, ENSMUST00000105110.4
    Conserved Domains (1) summary
    pfam14642
    Location:1178
    FAM47; FAM47 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    77781369..77783016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)