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TNR tenascin R [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 708707, updated on 5-Mar-2024

Summary

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Official Symbol
TNRprovided by VGNC
Official Full Name
tenascin Rprovided by VGNC
Primary source
VGNC:VGNC:78609
Locus tag
EGK_01991
See related
Ensembl:ENSMMUG00000015723
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
26
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (32572698..33119946, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (191810312..192236019)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114679323 Neighboring gene uncharacterized LOC114677670 Neighboring gene uncharacterized LOC114679329 Neighboring gene uncharacterized LOC114679330 Neighboring gene uncharacterized LOC106994728 Neighboring gene uncharacterized LOC114679339 Neighboring gene small Cajal body-specific RNA 3 Neighboring gene COP1 E3 ubiquitin ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tenascin-R
Names
tenascin R (restrictin, janusin)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261001.1 → NP_001247930.1  tenascin-R

    See identical proteins and their annotated locations for NP_001247930.1

    Status: PROVISIONAL

    Source sequence(s)
    JU321147
    UniProtKB/TrEMBL
    A0A8J8YJC4, F6SEB7, G7MFE3, H9ER94
    Related
    ENSMMUP00000037595.3, ENSMMUT00000044571.3
    Conserved Domains (4) summary
    cd00063
    Location:1042 → 1127
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:1133 → 1342
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam00041
    Location:865 → 944
    fn3; Fibronectin type III domain
    pfam07974
    Location:299 → 323
    EGF_2; EGF-like domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    32572698..33119946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028843458.1 → XP_028699291.1  tenascin-R isoform X1

    UniProtKB/TrEMBL
    F6QQZ0, F6SEB7
    Related
    ENSMMUP00000020646.3, ENSMMUT00000022070.4
    Conserved Domains (4) summary
    cd00063
    Location:1042 → 1127
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:1133 → 1342
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam07974
    Location:299 → 323
    EGF_2; EGF-like domain
    pfam00041
    Location:865 → 944
    fn3; Fibronectin type III domain

  2. XM_015123308.2 → XP_014978794.2  tenascin-R isoform X1

    UniProtKB/TrEMBL
    F6QQZ0, F6SEB7
    Conserved Domains (4) summary
    cd00063
    Location:1042 → 1127
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:1133 → 1342
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam07974
    Location:299 → 323
    EGF_2; EGF-like domain
    pfam00041
    Location:865 → 944
    fn3; Fibronectin type III domain

  3. XM_028843460.1 → XP_028699293.1  tenascin-R isoform X3

    Conserved Domains (3) summary
    cd00063
    Location:709 → 794
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:800 → 1009
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam00041
    Location:532 → 611
    fn3; Fibronectin type III domain

  4. XM_015123315.2 → XP_014978801.2  tenascin-R isoform X2

    UniProtKB/TrEMBL
    F6SEB7
    Conserved Domains (3) summary
    cd00063
    Location:1042 → 1127
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07974
    Location:299 → 323
    EGF_2; EGF-like domain
    pfam00041
    Location:865 → 944
    fn3; Fibronectin type III domain
Nucleotide Protein
Heading Accession and Version

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