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4933406B17Rik RIKEN cDNA 4933406B17 gene [ Mus musculus (house mouse) ]

Gene ID: 71040, updated on 8-Feb-2024

Summary

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Official Symbol
4933406B17Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933406B17 geneprovided by MGI
Primary source
MGI:MGI:1918290
See related
Ensembl:ENSMUSG00000110427 AllianceGenome:MGI:1918290
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm45852
Expression
Biased expression in testis adult (RPKM 1.4), genital fat pad adult (RPKM 1.0) and 2 other tissues See more
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Genomic context

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See 4933406B17Rik in Genome Data Viewer
Location:
8; 8 D1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (96223042..96230043)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (95496414..95503409)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm71 Neighboring gene cilia and flagella associated protein 20 Neighboring gene STARR-positive B cell enhancer ABC_E245 Neighboring gene casein kinase 2, alpha prime polypeptide Neighboring gene STARR-seq mESC enhancer starr_22388 Neighboring gene coiled-coil domain containing 113 Neighboring gene STARR-seq mESC enhancer starr_22390 Neighboring gene serine protease 54

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    96223042..96230043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_879117.3 RNA Sequence

    Related
    ENSMUST00000212927.2

  2. XR_879118.3 RNA Sequence

  3. XR_879116.3 RNA Sequence

  4. XR_004934975.1 RNA Sequence

  5. XR_004934976.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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