U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HNF1B HNF1 homeobox B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714540, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
HNF1Bprovided by VGNC
Official Full Name
HNF1 homeobox Bprovided by VGNC
Primary source
VGNC:VGNC:73384
Locus tag
EGK_08628
See related
Ensembl:ENSMMUG00000003431
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (33352867..33414734)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (43712211..43775208, complement)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114673102 Neighboring gene TBC1 domain family member 3B-like Neighboring gene uncharacterized LOC114673106 Neighboring gene uncharacterized LOC114673108 Neighboring gene uncharacterized LOC106994026 Neighboring gene DExD-box helicase 52 Neighboring gene microRNA mir-378j

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in insulin secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in liver development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pancreas development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hepatocyte nuclear factor 1-beta

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001194548.3 → NP_001181477.1  hepatocyte nuclear factor 1-beta

    See identical proteins and their annotated locations for NP_001181477.1

    Status: PROVISIONAL

    Source sequence(s)
    QNVO02000162
    UniProtKB/TrEMBL
    A0A8J8Y4G0, F7F9C9, G7NI16
    Related
    ENSMMUP00000004573.2, ENSMMUT00000004853.4
    Conserved Domains (3) summary
    cd00086
    Location:232 → 305
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04812
    Location:314 → 550
    HNF-1B_C; Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus
    pfam04814
    Location:8 → 173
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    33352867..33414734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028835662.1 → XP_028691495.1  hepatocyte nuclear factor 1-beta isoform X2

    Conserved Domains (3) summary
    cd00086
    Location:206 → 279
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04812
    Location:288 → 426
    HNF-1B_C; Hepatocyte nuclear factor 1 (HNF-1), beta isoform C-terminus
    pfam04814
    Location:8 → 174
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

  2. XM_001112182.4 → XP_001112182.2  hepatocyte nuclear factor 1-beta isoform X1

    See identical proteins and their annotated locations for XP_001112182.2

    Conserved Domains (3) summary
    cd00086
    Location:206 → 279
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04812
    Location:288 → 524
    HNF-1B_C; Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus
    pfam04814
    Location:8 → 173
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous