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8430429K09Rik RIKEN cDNA 8430429K09 gene [ Mus musculus (house mouse) ]

Gene ID: 71523, updated on 8-Feb-2024

Summary

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Official Symbol
8430429K09Rikprovided by MGI
Official Full Name
RIKEN cDNA 8430429K09 geneprovided by MGI
Primary source
MGI:MGI:1918773
See related
Ensembl:ENSMUSG00000034587 AllianceGenome:MGI:1918773
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in testis adult (RPKM 3.3), CNS E14 (RPKM 1.9) and 28 other tissues See more
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Genomic context

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Location:
11 A1; 11 2.42 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (3402437..3429831)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (3452437..3479831)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12592 Neighboring gene STARR-positive B cell enhancer ABC_E5203 Neighboring gene STARR-positive B cell enhancer ABC_E2345 Neighboring gene STARR-positive B cell enhancer ABC_E3929 Neighboring gene phosphoinositide-3-kinase interacting protein 1 Neighboring gene STARR-seq mESC enhancer starr_28349 Neighboring gene LIM domain kinase 2 Neighboring gene STARR-seq mESC enhancer starr_28351 Neighboring gene STARR-positive B cell enhancer ABC_E1818 Neighboring gene predicted gene, 51879 Neighboring gene ring finger protein 185 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:3352424-3352533 Neighboring gene predicted gene, 53661 Neighboring gene 39S ribosomal protein L30, mitochondrial pseudogene Neighboring gene phospholipase A2, group III Neighboring gene inositol polyphosphate 5-phosphatase J Neighboring gene selenoprotein M

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028317.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK086952, BY284012, BY331368
    Related
    ENSMUST00000142397.2

  2. NR_045275.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK018450, BY645620
    Related
    ENSMUST00000146456.3

  3. NR_045276.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK018450, BY069744, BY645620
    Related
    ENSMUST00000144844.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    3402437..3429831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_027820.1: Suppressed sequence

    Description
    NM_027820.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate, and the encoded protein has no support.
Nucleotide Protein Strain
Heading Accession and Version

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