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Mamdc2 MAM domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 71738, updated on 23-Jun-2021

Summary

Official Symbol
Mamdc2provided by MGI
Official Full Name
MAM domain containing 2provided by MGI
Primary source
MGI:MGI:1918988
See related
Ensembl:ENSMUSG00000033207
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mam; mamcan; AI591564; 1200015L10Rik
Expression
Biased expression in lung adult (RPKM 30.1), subcutaneous fat pad adult (RPKM 9.7) and 4 other tissues See more
Orthologs
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Genomic context

See Mamdc2 in Genome Data Viewer
Location:
19; 19 B
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (23279973..23425855, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (23302609..23448497, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (23377099..23522812, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes 5 Neighboring gene predicted gene, 33950 Neighboring gene predicted gene, 24263 Neighboring gene predicted gene, 41821 Neighboring gene predicted gene, 34012 Neighboring gene RIKEN cDNA 1700028P14 gene Neighboring gene 40S ribosomal protein S7 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glycosaminoglycan binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in interstitial matrix IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
MAM domain-containing protein 2
Names
MAM domain-containing proteoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174857.3NP_777282.1  MAM domain-containing protein 2 precursor

    See identical proteins and their annotated locations for NP_777282.1

    Status: PROVISIONAL

    Source sequence(s)
    AC124557, AC131118, AC144941
    Consensus CDS
    CCDS29707.1
    UniProtKB/Swiss-Prot
    Q8CG85
    UniProtKB/TrEMBL
    A0A0R4J0J7
    Related
    ENSMUSP00000045432.7, ENSMUST00000036069.8
    Conserved Domains (2) summary
    cd06263
    Location:509664
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam00629
    Location:509666
    MAM; MAM domain, meprin/A5/mu

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    23279973..23425855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161694.1XP_036017587.1  MAM domain-containing protein 2 isoform X1

    Conserved Domains (2) summary
    cd06263
    Location:512667
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam00629
    Location:173330
    MAM; MAM domain, meprin/A5/mu

RNA

  1. XR_004940174.1 RNA Sequence

  2. XR_003952820.2 RNA Sequence

    Related
    ENSMUST00000236349.2
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