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Lypd6b LY6/PLAUR domain containing 6B [ Mus musculus (house mouse) ]

Gene ID: 71897, updated on 23-Jun-2021

Summary

Official Symbol
Lypd6bprovided by MGI
Official Full Name
LY6/PLAUR domain containing 6Bprovided by MGI
Primary source
MGI:MGI:1919147
See related
Ensembl:ENSMUSG00000026765
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AW049525; 2310010M24Rik
Expression
Broad expression in CNS E18 (RPKM 3.8), cortex adult (RPKM 2.3) and 15 other tissues See more
Orthologs
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Genomic context

See Lypd6b in Genome Data Viewer
Location:
2; 2 C1.1
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (49677380..49838861)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (49787340..49948849)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (49643206..49804366)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene enhancer of polycomb homolog 2 Neighboring gene kinesin family member 5C Neighboring gene predicted gene, 46738 Neighboring gene LY6/PLAUR domain containing 6 Neighboring gene methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria Neighboring gene predicted gene 13483

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC143485

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables acetylcholine receptor regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables acetylcholine receptor regulator activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in anchored component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ly6/PLAUR domain-containing protein 6B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001379381.1NP_001366310.1  ly6/PLAUR domain-containing protein 6B precursor

    Status: VALIDATED

    Source sequence(s)
    AL806528, AL929069, BX813318
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  2. NM_001379382.1NP_001366311.1  ly6/PLAUR domain-containing protein 6B precursor

    Status: VALIDATED

    Source sequence(s)
    AL806528, AL929069, BX813318
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  3. NM_001379383.1NP_001366312.1  ly6/PLAUR domain-containing protein 6B precursor

    Status: VALIDATED

    Source sequence(s)
    AL806528, AL929069, BX813318
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  4. NM_001379384.1NP_001366313.1  ly6/PLAUR domain-containing protein 6B precursor

    Status: VALIDATED

    Source sequence(s)
    AL806528, AL929069, BX813318
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  5. NM_001379385.1NP_001366314.1  ly6/PLAUR domain-containing protein 6B precursor

    Status: VALIDATED

    Source sequence(s)
    AL806528, AL929069, BX813318
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  6. NM_001379386.1NP_001366315.1  ly6/PLAUR domain-containing protein 6B precursor

    Status: VALIDATED

    Source sequence(s)
    AL806528, AL929069, BX813318
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  7. NM_001379387.1NP_001366316.1  ly6/PLAUR domain-containing protein 6B precursor

    Status: VALIDATED

    Source sequence(s)
    AL806528, AL929069, BX813318
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  8. NM_027990.4NP_082266.2  ly6/PLAUR domain-containing protein 6B precursor

    Status: VALIDATED

    Source sequence(s)
    AL806528, AL929069, BX813318
    Consensus CDS
    CCDS16025.1
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    49677380..49838861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006498352.5XP_006498415.1  ly6/PLAUR domain-containing protein 6B isoform X1

    See identical proteins and their annotated locations for XP_006498415.1

    UniProtKB/Swiss-Prot
    Q9D7F2
    Conserved Domains (1) summary
    pfam16975
    Location:59163
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  2. XM_006498350.5XP_006498413.1  ly6/PLAUR domain-containing protein 6B isoform X1

    See identical proteins and their annotated locations for XP_006498413.1

    UniProtKB/Swiss-Prot
    Q9D7F2
    Conserved Domains (1) summary
    pfam16975
    Location:59163
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  3. XM_006498351.5XP_006498414.1  ly6/PLAUR domain-containing protein 6B isoform X1

    See identical proteins and their annotated locations for XP_006498414.1

    UniProtKB/Swiss-Prot
    Q9D7F2
    Conserved Domains (1) summary
    pfam16975
    Location:59163
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  4. XM_006498353.5XP_006498416.1  ly6/PLAUR domain-containing protein 6B isoform X1

    See identical proteins and their annotated locations for XP_006498416.1

    UniProtKB/Swiss-Prot
    Q9D7F2
    Conserved Domains (1) summary
    pfam16975
    Location:59163
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  5. XM_006498354.5XP_006498417.1  ly6/PLAUR domain-containing protein 6B isoform X1

    See identical proteins and their annotated locations for XP_006498417.1

    UniProtKB/Swiss-Prot
    Q9D7F2
    Conserved Domains (1) summary
    pfam16975
    Location:59163
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  6. XM_017319267.1XP_017174756.1  ly6/PLAUR domain-containing protein 6B isoform X1

    UniProtKB/Swiss-Prot
    Q9D7F2
    Related
    ENSMUSP00000028103.7, ENSMUST00000028103.13
    Conserved Domains (1) summary
    pfam16975
    Location:59163
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
  7. XM_006498359.5XP_006498422.1  ly6/PLAUR domain-containing protein 6B isoform X2

    See identical proteins and their annotated locations for XP_006498422.1

    UniProtKB/Swiss-Prot
    Q9D7F2
    Conserved Domains (1) summary
    pfam16975
    Location:40144
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
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