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Fam219a family with sequence similarity 219, member A [ Mus musculus (house mouse) ]

Gene ID: 71901, updated on 23-Jun-2021

Summary

Official Symbol
Fam219aprovided by MGI
Official Full Name
family with sequence similarity 219, member Aprovided by MGI
Primary source
MGI:MGI:1919151
See related
Ensembl:ENSMUSG00000028439
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310028H24Rik
Expression
Broad expression in frontal lobe adult (RPKM 23.8), cortex adult (RPKM 22.6) and 25 other tissues See more
Orthologs
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Genomic context

See Fam219a in Genome Data Viewer
Location:
4; 4 A5
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (41517691..41569538, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (41517691..41569607, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (41465962..41516560, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1110017D15 gene Neighboring gene myogenesis regulating glycosidase (putative) Neighboring gene family with sequence similarity 219, member A, opposite strand Neighboring gene predicted gene 12404 Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene predicted gene 12405 Neighboring gene energy homeostasis associated

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein FAM219A
Names
likely ortholog of H. sapiens chromosome 9 open reading frame 25 (C9orf25)
uncharacterized protein C9orf25 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159583.2NP_001153055.1  protein FAM219A isoform 1

    See identical proteins and their annotated locations for NP_001153055.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AL831723
    Consensus CDS
    CCDS51141.1
    UniProtKB/Swiss-Prot
    Q9D772
    UniProtKB/TrEMBL
    A2ANP1
    Related
    ENSMUSP00000103687.4, ENSMUST00000108052.10
    Conserved Domains (1) summary
    pfam15260
    Location:37167
    FAM219A; Protein family FAM219A
  2. NM_001377101.1NP_001364030.1  protein FAM219A isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL831723
    Conserved Domains (1) summary
    pfam15260
    Location:54181
    FAM219A; Protein family FAM219A
  3. NM_001377102.1NP_001364031.1  protein FAM219A isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) encodes the longest isoform (3).
    Source sequence(s)
    AL831723
    Conserved Domains (1) summary
    pfam15260
    Location:54182
    FAM219A; Protein family FAM219A
  4. NM_001377103.1NP_001364032.1  protein FAM219A isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL831723
    Conserved Domains (1) summary
    pfam15260
    Location:43170
    FAM219A; Protein family FAM219A
  5. NM_001377104.1NP_001364033.1  protein FAM219A isoform 6

    Status: VALIDATED

    Source sequence(s)
    AL831723, BC172173
    Conserved Domains (1) summary
    pfam15260
    Location:37164
    FAM219A; Protein family FAM219A
  6. NM_001377105.1NP_001364034.1  protein FAM219A isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL831723
    Related
    ENSMUSP00000103685.2, ENSMUST00000108050.2
    Conserved Domains (1) summary
    pfam15260
    Location:26153
    FAM219A; Protein family FAM219A
  7. NM_027993.4NP_082269.2  protein FAM219A isoform 2

    See identical proteins and their annotated locations for NP_082269.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, which results in a protein (isoform 2) with a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AL831723
    Consensus CDS
    CCDS38718.1
    UniProtKB/Swiss-Prot
    Q9D772
    Related
    ENSMUSP00000103684.3, ENSMUST00000108049.9
    Conserved Domains (1) summary
    pfam15260
    Location:26156
    FAM219A; Protein family FAM219A

RNA

  1. NR_165081.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL831723
  2. NR_165082.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL831723

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    41517691..41569538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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