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Tmem79 transmembrane protein 79 [ Mus musculus (house mouse) ]

Gene ID: 71913, updated on 3-Jul-2021

Summary

Official Symbol
Tmem79provided by MGI
Official Full Name
transmembrane protein 79provided by MGI
Primary source
MGI:MGI:1919163
See related
Ensembl:ENSMUSG00000001420
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
m; ma; Mat; Matt; 2310042N02Rik; 2310074C17Rik
Expression
Broad expression in stomach adult (RPKM 22.5), duodenum adult (RPKM 18.0) and 15 other tissues See more
Orthologs
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Genomic context

See Tmem79 in Genome Data Viewer
Location:
3; 3 F1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (88235960..88241740, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (88328653..88334433, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (88132575..88138355, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene chaperonin containing Tcp1, subunit 3 (gamma) Neighboring gene glycosylated lysosomal membrane protein Neighboring gene SMG5 nonsense mediated mRNA decay factor Neighboring gene progestin and adipoQ receptor family member VI

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
matted
GeneReviews: Not available

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Spontaneous (2) 
  • Gene trapped (1) 
  • Targeted (3)  1 citation

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in lysosomal membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in lysosomal membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in trans-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in trans-Golgi network membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
transmembrane protein 79
Names
mattrin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024246.5NP_077208.1  transmembrane protein 79

    See identical proteins and their annotated locations for NP_077208.1

    Status: PROVISIONAL

    Source sequence(s)
    AC102388
    Consensus CDS
    CCDS17470.1
    UniProtKB/Swiss-Prot
    Q9D709
    Related
    ENSMUSP00000001456.5, ENSMUST00000001456.11
    Conserved Domains (1) summary
    pfam01124
    Location:317355
    MAPEG; MAPEG family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    88235960..88241740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006502125.4XP_006502188.1  transmembrane protein 79 isoform X1

    See identical proteins and their annotated locations for XP_006502188.1

    UniProtKB/Swiss-Prot
    Q9D709
    Conserved Domains (1) summary
    pfam01124
    Location:317355
    MAPEG; MAPEG family
  2. XM_006502124.4XP_006502187.1  transmembrane protein 79 isoform X1

    See identical proteins and their annotated locations for XP_006502187.1

    UniProtKB/Swiss-Prot
    Q9D709
    Related
    ENSMUSP00000103177.2, ENSMUST00000107553.8
    Conserved Domains (1) summary
    pfam01124
    Location:317355
    MAPEG; MAPEG family
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