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TRE-TTC3-1 tRNA-Glu (anticodon TTC) 3-1 [ Homo sapiens (human) ]

Gene ID: 7193, updated on 10-Oct-2023

Summary

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Official Symbol
TRE-TTC3-1provided by HGNC
Official Full Name
tRNA-Glu (anticodon TTC) 3-1provided by HGNC
Primary source
HGNC:HGNC:12265
See related
MIM:180640; AllianceGenome:HGNC:12265
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRE; TRNE; TRNAE1
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Genomic context

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Location:
1p36.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16872583..16872654)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (16683012..16683083)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (17199078..17199149)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene tRNA-Val (anticodon CAC) 11-2 Neighboring gene tRNA-Gly (anticodon CCC) 1-2 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:17193182-17193781 Neighboring gene putative protein FAM231BP Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:17197263-17198100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:17198101-17198937 Neighboring gene long intergenic non-protein coding RNA 3126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17201146-17201709 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17201710-17202272 Neighboring gene RNA, U1 small nuclear 5, pseudogene Neighboring gene uncharacterized LOC107985101 Neighboring gene uncharacterized LOC105376805

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A human tRNAGlu gene of high transcriptional activity. Goddard JP, et al. Nucleic Acids Res, 1983 May 11. PMID 6134271, Free PMC Article
  2. Chromosomal assignment of a glutamic acid transfer RNA (tRNAGlu) gene to 1p36. Boyd E, et al. Hum Genet, 1989 Jan. PMID 2912885
  3. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • tRNA glutamic acid (anticodon UUC)
  • tRNA-Glu (TTC) 3-1
  • transfer RNA glutamic acid (anticodon UUC)
  • transfer RNA glutamic acid 1 (anticodon UUC)
  • transfer RNA-Glu (TTC) 3-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    16872583..16872654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791756.1 Reference GRCh38.p14 PATCHES

    Range
    1287734..1287805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    16683012..16683083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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