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Zbed5 zinc finger, BED type containing 5 [ Mus musculus (house mouse) ]

Gene ID: 71970, updated on 23-Jun-2021

Summary

Official Symbol
Zbed5provided by MGI
Official Full Name
zinc finger, BED type containing 5provided by MGI
Primary source
MGI:MGI:1919220
See related
Ensembl:ENSMUSG00000034173
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Scand3; 2410018M08Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 344.6), duodenum adult (RPKM 276.2) and 28 other tissues See more
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Genomic context

See Zbed5 in Genome Data Viewer
Location:
5; 5 G1.3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (129924564..129937350)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (129895723..129908509)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (130371593..130379493)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene sulfatase modifying factor 2 Neighboring gene phosphorylase kinase gamma 1 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 2 Neighboring gene nuclear protein transcriptional regulator 1 like Neighboring gene vitamin K epoxide reductase complex, subunit 1-like 1 Neighboring gene glucuronidase, beta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
SCAN domain containing 3
Names
ZSCAN domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001359408.1NP_001346337.1  SCAN domain containing 3 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AC164071
    Conserved Domains (3) summary
    pfam05699
    Location:650715
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam06747
    Location:95126
    CHCH; CHCH domain
    pfam14291
    Location:291386
    DUF4371; Domain of unknown function (DUF4371)
  2. NM_183088.2NP_898911.2  SCAN domain containing 3 isoform 1

    See identical proteins and their annotated locations for NP_898911.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC164071, AK010551
    Consensus CDS
    CCDS39292.1
    UniProtKB/TrEMBL
    B2RPU8, Q8CEW7
    Related
    ENSMUSP00000044533.8, ENSMUST00000041466.14
    Conserved Domains (3) summary
    pfam05699
    Location:671736
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam06747
    Location:116147
    CHCH; CHCH domain
    pfam14291
    Location:335407
    DUF4371; Domain of unknown function (DUF4371)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    129924564..129937350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321106.2XP_017176595.1  SCAN domain containing 3 isoform X2

    Conserved Domains (1) summary
    pfam06747
    Location:95126
    CHCH; CHCH domain
  2. XM_017321105.3XP_017176594.1  SCAN domain containing 3 isoform X1

    Conserved Domains (3) summary
    pfam05699
    Location:650715
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam06747
    Location:95126
    CHCH; CHCH domain
    pfam14291
    Location:291386
    DUF4371; Domain of unknown function (DUF4371)

RNA

  1. XR_004942567.1 RNA Sequence

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