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Tedc2 tubulin epsilon and delta complex 2 [ Mus musculus (house mouse) ]

Gene ID: 72016, updated on 23-Jun-2021

Summary

Official Symbol
Tedc2provided by MGI
Official Full Name
tubulin epsilon and delta complex 2provided by MGI
Primary source
MGI:MGI:1919266
See related
Ensembl:ENSMUSG00000024118
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1600002H07Rik
Expression
Ubiquitous expression in liver adult (RPKM 18.6), liver E14.5 (RPKM 10.5) and 28 other tissues See more
Orthologs
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Genomic context

See Tedc2 in Genome Data Viewer
Location:
17; 17 A3.3
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (24434028..24439825, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (24215054..24220934, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (24351999..24357714, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit C Neighboring gene TBC1 domain family, member 24 Neighboring gene netrin 3 Neighboring gene cyclin F Neighboring gene microRNA 5134 Neighboring gene microRNA 6965

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in positive regulation of smoothened signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in centriole IDA
Inferred from Direct Assay
more info
PubMed 
located_in cilium IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tubulin epsilon and delta complex protein 2
Names
uncharacterized protein C16orf59 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028056.2NP_082332.1  tubulin epsilon and delta complex protein 2

    See identical proteins and their annotated locations for NP_082332.1

    Status: VALIDATED

    Source sequence(s)
    AK005395, BC072612
    Consensus CDS
    CCDS28479.1
    UniProtKB/Swiss-Prot
    Q6GQV0
    Related
    ENSMUSP00000024930.8, ENSMUST00000024930.8
    Conserved Domains (1) summary
    pfam15764
    Location:150434
    DUF4693; Domain of unknown function (DUF4693)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    24434028..24439825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246632.4XP_011244934.1  tubulin epsilon and delta complex protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15764
    Location:150389
    DUF4693; Domain of unknown function (DUF4693)
  2. XM_030250058.2XP_030105918.1  tubulin epsilon and delta complex protein 2 isoform X2

    Conserved Domains (1) summary
    pfam15764
    Location:1249
    DUF4693; Domain of unknown function (DUF4693)
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