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2510009E07Rik RIKEN cDNA 2510009E07 gene [ Mus musculus (house mouse) ]

Gene ID: 72190, updated on 11-Apr-2024

Summary

Official Symbol
2510009E07Rikprovided by MGI
Official Full Name
RIKEN cDNA 2510009E07 geneprovided by MGI
Primary source
MGI:MGI:1919440
See related
Ensembl:ENSMUSG00000043391 AllianceGenome:MGI:1919440
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in nervous system development. Is expressed in central nervous system; dorsal root ganglion; neural retina; and vibrissa. Orthologous to human C3orf70 (chromosome 3 open reading frame 70). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in whole brain E14.5 (RPKM 12.0), CNS E18 (RPKM 10.8) and 27 other tissues See more
Orthologs
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Genomic context

Location:
16 B1; 16 12.8 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (21467795..21513415, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (21649045..21694665, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53939 Neighboring gene STARR-seq mESC enhancer starr_40364 Neighboring gene VPS8 CORVET complex subunit Neighboring gene STARR-positive B cell enhancer mm9_chr16:21488490-21488791 Neighboring gene predicted gene, 50612 Neighboring gene STARR-positive B cell enhancer ABC_E10895 Neighboring gene STARR-positive B cell enhancer mm9_chr16:21630703-21631004 Neighboring gene STARR-positive B cell enhancer mm9_chr16:21631987-21632288 Neighboring gene STARR-seq mESC enhancer starr_40369 Neighboring gene STARR-positive B cell enhancer ABC_E11607 Neighboring gene RIKEN cDNA 1300002E11 gene Neighboring gene enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase Neighboring gene STARR-positive B cell enhancer ABC_E8908 Neighboring gene STARR-seq mESC enhancer starr_40372

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in nervous system development IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0524 protein C3orf70 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001881.2NP_001001881.1  UPF0524 protein C3orf70 homolog

    See identical proteins and their annotated locations for NP_001001881.1

    Status: VALIDATED

    Source sequence(s)
    AC130214, CJ109106
    Consensus CDS
    CCDS28062.1
    UniProtKB/Swiss-Prot
    Q6GQU0, Q8C8Z2
    Related
    ENSMUSP00000062303.8, ENSMUST00000053336.8
    Conserved Domains (1) summary
    pfam15823
    Location:12248
    UPF0524; UPF0524 of C3orf70

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    21467795..21513415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)