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Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [ Mus musculus (house mouse) ]

Gene ID: 72289, updated on 28-Sep-2021

Summary

Official Symbol
Malat1provided by MGI
Official Full Name
metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)provided by MGI
Primary source
MGI:MGI:1919539
See related
Ensembl:ENSMUSG00000092341
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NEA; Neat2; AI647968; 2210401K01Rik; 9430072K23Rik
Summary
This gene produces a long non-coding RNA that is cleaved into a mature, functional transcript as well as a small cytoplasmic RNA (mascRNA). The mature transcript is stabilized by a 3' triple helical structure and is retained in the nucleus. This transcript functions in the regulation of gene expression and proliferation and may be upregulated in tumors. [provided by RefSeq, Nov 2016]
Orthologs
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Genomic context

See Malat1 in Genome Data Viewer
Location:
19; 19 A
Exon count:
1
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5845718..5852700, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5795690..5802672, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (5795690..5802671, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene zinc ribbon domain containing 2 Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene SCY1-like 1 (S. cerevisiae) Neighboring gene Malat1-associated small cytoplasmic RNA Neighboring gene nuclear paraspeckle assembly transcript 1 (non-protein coding) Neighboring gene FERM domain containing 8, opposite strand Neighboring gene FERM domain containing 8

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002847.3 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AK028133, EF177380
    Related
    ENSMUST00000172812.3

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    5845718..5852700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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