U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Zc2hc1c zinc finger, C2HC-type containing 1C [ Mus musculus (house mouse) ]

Gene ID: 72350, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Zc2hc1cprovided by MGI
Official Full Name
zinc finger, C2HC-type containing 1Cprovided by MGI
Primary source
MGI:MGI:1919600
See related
Ensembl:ENSMUSG00000045064 AllianceGenome:MGI:1919600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam164c; 2810002I04Rik
Summary
Predicted to enable metal ion binding activity. Is expressed in pancreas epithelium. Orthologous to human ZC2HC1C (zinc finger C2HC-type containing 1C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 5.9), genital fat pad adult (RPKM 1.7) and 14 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Zc2hc1c in Genome Data Viewer
Location:
12 D1- D2; 12 39.63 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (85321020..85346132)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (85274243..85299361)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene mutL homolog 3 Neighboring gene microRNA 6938 Neighboring gene 40S ribosomal protein S25 pseudogene Neighboring gene STARR-seq mESC enhancer starr_32767 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:86621244-86621431 Neighboring gene acylphosphatase 1 Neighboring gene STARR-positive B cell enhancer ABC_E7161 Neighboring gene STARR-seq mESC enhancer starr_32769 Neighboring gene NIMA (never in mitosis gene a)-related expressed kinase 9 Neighboring gene STARR-seq mESC enhancer starr_32770 Neighboring gene STARR-seq mESC enhancer starr_32772 Neighboring gene transmembrane p24 trafficking protein 10 Neighboring gene STARR-seq mESC enhancer starr_32773

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies. Breslow DK, et al. Nat Genet, 2018 Mar. PMID 29459677, Free PMC Article
  2. Identification of transcripts with enriched expression in the developing and adult pancreas. Hoffman BG, et al. Genome Biol, 2008. PMID 18554416, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger C2HC domain-containing protein 1C
Names
family with sequence similarity 164, member C
protein FAM164C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172414.4 → NP_766002.2  zinc finger C2HC domain-containing protein 1C

    See identical proteins and their annotated locations for NP_766002.2

    Status: VALIDATED

    Source sequence(s)
    AC159237, AK032455, AK036602, BX525619
    Consensus CDS
    CCDS26056.1
    UniProtKB/Swiss-Prot
    Q8CCG1, Q8CCM8
    UniProtKB/TrEMBL
    Q8CB75
    Related
    ENSMUSP00000051664.5, ENSMUST00000059341.5
    Conserved Domains (2) summary
    pfam03938
    Location:192 → 262
    OmpH; Outer membrane protein (OmpH-like)
    pfam13913
    Location:491 → 513
    zf-C2HC_2; zinc-finger of a C2HC-type

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    85321020..85346132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516270.3 → XP_006516333.1  zinc finger C2HC domain-containing protein 1C isoform X1

    See identical proteins and their annotated locations for XP_006516333.1

    UniProtKB/Swiss-Prot
    Q8CCG1, Q8CCM8
    UniProtKB/TrEMBL
    Q8CB75
    Conserved Domains (2) summary
    pfam03938
    Location:192 → 262
    OmpH; Outer membrane protein (OmpH-like)
    pfam13913
    Location:491 → 513
    zf-C2HC_2; zinc-finger of a C2HC-type

  2. XM_006516269.4 → XP_006516332.1  zinc finger C2HC domain-containing protein 1C isoform X1

    See identical proteins and their annotated locations for XP_006516332.1

    UniProtKB/Swiss-Prot
    Q8CCG1, Q8CCM8
    UniProtKB/TrEMBL
    Q8CB75
    Conserved Domains (2) summary
    pfam03938
    Location:192 → 262
    OmpH; Outer membrane protein (OmpH-like)
    pfam13913
    Location:491 → 513
    zf-C2HC_2; zinc-finger of a C2HC-type

  3. XM_036157623.1 → XP_036013516.1  zinc finger C2HC domain-containing protein 1C isoform X1

    UniProtKB/Swiss-Prot
    Q8CCG1, Q8CCM8
    UniProtKB/TrEMBL
    Q8CB75
    Conserved Domains (2) summary
    pfam03938
    Location:192 → 262
    OmpH; Outer membrane protein (OmpH-like)
    pfam13913
    Location:491 → 513
    zf-C2HC_2; zinc-finger of a C2HC-type
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CCG1.1 GenPept UniProtKB/Swiss-Prot:Q8CCG1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous