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Cwf19l1 CWF19-like 1, cell cycle control (S. pombe) [ Mus musculus (house mouse) ]

Gene ID: 72502, updated on 23-Jun-2021

Summary

Official Symbol
Cwf19l1provided by MGI
Official Full Name
CWF19-like 1, cell cycle control (S. pombe)provided by MGI
Primary source
MGI:MGI:1919752
See related
Ensembl:ENSMUSG00000025200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in CNS E14 (RPKM 3.0), CNS E18 (RPKM 3.0) and 26 other tissues See more
Orthologs
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Genomic context

See Cwf19l1 in Genome Data Viewer
Location:
19; 19 C3
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (44097076..44124324, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (44108637..44135876, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (44183127..44210366, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene ER lipid raft associated 1 Neighboring gene uracil DNA glycosylase pseudogene Neighboring gene conserved helix-loop-helix ubiquitous kinase Neighboring gene predicted gene, 24336 Neighboring gene predicted gene, 52383 Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 2 Neighboring gene polycystic kidney disease 2-like 1 Neighboring gene stearoyl-coenzyme A desaturase 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • 2610528C06Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA lariat debranching enzyme activator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of post-mRNA release spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081077.1NP_001074546.1  CWF19-like protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001074546.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1)
    Source sequence(s)
    AC125101
    Consensus CDS
    CCDS37995.1
    UniProtKB/Swiss-Prot
    Q8CI33
    Related
    ENSMUSP00000026218.6, ENSMUST00000026218.7
    Conserved Domains (3) summary
    cd07380
    Location:9229
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:446534
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:327422
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  2. NM_001356578.1NP_001343507.1  CWF19-like protein 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' structure, resulting in the use of a downstream start codon compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AC125101
    Conserved Domains (3) summary
    cd07380
    Location:991
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:304396
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:189284
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    44097076..44124324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527364.3XP_006527427.1  CWF19-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006527427.1

    UniProtKB/Swiss-Prot
    Q8CI33
    Conserved Domains (3) summary
    cd07380
    Location:991
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:304396
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:189284
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  2. XM_030251084.1XP_030106944.1  CWF19-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04676
    Location:197289
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:82177
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  3. XM_036161696.1XP_036017589.1  CWF19-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04676
    Location:197289
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:82177
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  4. XM_011247358.3XP_011245660.1  CWF19-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011245660.1

    UniProtKB/Swiss-Prot
    Q8CI33
    Conserved Domains (3) summary
    cd07380
    Location:991
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:304396
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:189284
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  5. XM_030251083.2XP_030106943.1  CWF19-like protein 1 isoform X1

    Conserved Domains (3) summary
    cd07380
    Location:991
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:304396
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:189284
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  6. XM_017318296.2XP_017173785.1  CWF19-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q8CI33
    Related
    ENSMUST00000237067.2
    Conserved Domains (3) summary
    cd07380
    Location:991
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:304396
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:189284
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  7. XM_036161695.1XP_036017588.1  CWF19-like protein 1 isoform X1

    Conserved Domains (3) summary
    cd07380
    Location:991
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:304396
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:189284
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  8. XM_017318297.2XP_017173786.1  CWF19-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q8CI33
    Conserved Domains (3) summary
    cd07380
    Location:991
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:304396
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:189284
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  9. XM_036161698.1XP_036017591.1  CWF19-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04676
    Location:197289
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:82177
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  10. XM_030251087.2XP_030106947.1  CWF19-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04676
    Location:197289
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:82177
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  11. XM_030251086.2XP_030106946.1  CWF19-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04676
    Location:197289
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:82177
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  12. XM_030251085.2XP_030106945.1  CWF19-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04676
    Location:197289
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:82177
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  13. XM_036161697.1XP_036017590.1  CWF19-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04676
    Location:197289
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:82177
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
  14. XM_011247357.2XP_011245659.1  CWF19-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011245659.1

    UniProtKB/Swiss-Prot
    Q8CI33
    Conserved Domains (3) summary
    cd07380
    Location:991
    MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
    pfam04676
    Location:304396
    CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    cl00228
    Location:189284
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
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