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CT47A1 cancer/testis antigen family 47 member A1 [ Homo sapiens (human) ]

Gene ID: 728096, updated on 23-Nov-2021

Summary

Official Symbol
CT47A1provided by HGNC
Official Full Name
cancer/testis antigen family 47 member A1provided by HGNC
Primary source
HGNC:HGNC:33282
See related
Ensembl:ENSG00000236371 MIM:300780
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT47.1
Summary
This locus represents a member of the cancer/testis gene family 47. This family, also known as CT47, is comprised of 13 nearly identical loci clustered at Xq24. This locus is the most telomeric of the cluster.[provided by RefSeq, Sep 2010]
Expression
Restricted expression toward testis (RPKM 5.4) See more
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Genomic context

See CT47A1 in Genome Data Viewer
Location:
Xq24
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (120982476..120985886, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (120116320..120119642, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene cancer/testis antigen family 47 member A3 Neighboring gene cancer/testis antigen family 47 member A2 Neighboring gene uncharacterized LOC105373328 Neighboring gene CBLL1 pseudogene 1 Neighboring gene glutamate dehydrogenase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
cancer/testis antigen 47A
Names
cancer/testis CT47 family, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027743.1 RefSeqGene

    Range
    5001..8319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001080146.3NP_001073615.1  cancer/testis antigen 47A

    See identical proteins and their annotated locations for NP_001073615.1

    Status: VALIDATED

    Source sequence(s)
    AL670379
    Consensus CDS
    CCDS35391.1
    UniProtKB/Swiss-Prot
    Q5JQC4
    Related
    ENSP00000393315.1, ENST00000433030.4
    Conserved Domains (1) summary
    pfam15623
    Location:1263
    CT47; Cancer/testis gene family 47

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    120982476..120985886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011531388.2XP_011529690.1  cancer/testis antigen 47A isoform X1

    See identical proteins and their annotated locations for XP_011529690.1

    Conserved Domains (1) summary
    pfam15623
    Location:1247
    CT47; Cancer/testis gene family 47

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_021160027.1 Reference GRCh38.p13 PATCHES

    Range
    301876..305160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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