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Swi5 SWI5 recombination repair homolog (yeast) [ Mus musculus (house mouse) ]

Gene ID: 72931, updated on 23-Jun-2021

Summary

Official Symbol
Swi5provided by MGI
Official Full Name
SWI5 recombination repair homolog (yeast)provided by MGI
Primary source
MGI:MGI:1920181
See related
Ensembl:ENSMUSG00000044627
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI046671; 1500019F05Rik; 2900010J23Rik
Expression
Ubiquitous expression in testis adult (RPKM 100.7), adrenal adult (RPKM 74.9) and 28 other tissues See more
Orthologs
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Genomic context

See Swi5 in Genome Data Viewer
Location:
2; 2 B
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (32168817..32178154, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (32278805..32288136, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (32134336..32143588, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene protein-O-mannosyltransferase 1 Neighboring gene uridine-cytidine kinase 1 Neighboring gene 60S ribosomal protein L36 pseudogene Neighboring gene golgi autoantigen, golgin subfamily a, 2 Neighboring gene dynamin 1 Neighboring gene microRNA 3154

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of Swi5-Sfr1 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of Swi5-Sfr1 complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of Swi5-Sfr1 complex ISO
Inferred from Sequence Orthology
more info
 
part_of Swi5-Swi2 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
DNA repair protein SWI5 homolog
Names
protein SAE3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290552.1NP_001277481.1  DNA repair protein SWI5 homolog isoform a

    See identical proteins and their annotated locations for NP_001277481.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (a).
    Source sequence(s)
    AK013517, AL808027, BY611716
    Consensus CDS
    CCDS71026.1
    UniProtKB/Swiss-Prot
    Q8K3D3
    Related
    ENSMUSP00000109027.3, ENSMUST00000113400.3
    Conserved Domains (1) summary
    pfam07061
    Location:47119
    Swi5; Swi5
  2. NM_175190.5NP_780399.1  DNA repair protein SWI5 homolog isoform b

    See identical proteins and their annotated locations for NP_780399.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' terminal exon, and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
    Source sequence(s)
    AK013517, AL808027, BY611716
    Consensus CDS
    CCDS50566.1
    UniProtKB/Swiss-Prot
    Q8K3D3
    UniProtKB/TrEMBL
    E3WH32
    Related
    ENSMUSP00000139299.2, ENSMUST00000183946.8
    Conserved Domains (1) summary
    pfam07061
    Location:1587
    Swi5; Swi5

RNA

  1. NR_110965.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate 5' terminal exon and lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
    Source sequence(s)
    AK018775, AL808027, BY611716
    Related
    ENSMUST00000113397.9

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    32168817..32178154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_374118.5 RNA Sequence

    Related
    ENSMUST00000140406.8
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