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HMGB3P22 high mobility group box 3 pseudogene 22 [ Homo sapiens (human) ]

Gene ID: 729595, updated on 16-Jan-2024

Summary

Official Symbol
HMGB3P22provided by HGNC
Official Full Name
high mobility group box 3 pseudogene 22provided by HGNC
Primary source
HGNC:HGNC:39314
See related
Ensembl:ENSG00000225051 AllianceGenome:HGNC:39314
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
5q35.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (179694178..179694786)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (180249360..180249968)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (179121179..179121787)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377763 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:179105237-179105852 Neighboring gene chibby family member 3 Neighboring gene calnexin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23756 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16731 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16732 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23757 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:179131736-179132236 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:179132237-179132737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23758 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16733 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:179160227-179160727 Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:179176749-179177249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23759 Neighboring gene MPRA-validated peak5609 silencer Neighboring gene NADH:ubiquinone oxidoreductase subunit A12 pseudogene

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028953.2 

    Range
    99..707
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    179694178..179694786
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_016107298.1 Reference GRCh38.p14 PATCHES

    Range
    459738..460346
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    180249360..180249968
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    GenBank, FASTA, Sequence Viewer (Graphics)