U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

vldlr very low density lipoprotein receptor [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733485, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
vldlrprovided by Xenbase
Official Full Name
very low density lipoprotein receptorprovided by Xenbase
Primary source
Xenbase:XB-GENE-971958
See related
Ensembl:ENSXETG00000011709
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
vldlrch
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (128058687..128099846, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (115819597..115860758, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene pumilio RNA binding family member 3 Neighboring gene potassium channel, voltage gated modifier subfamily V, member 2 Neighboring gene uncharacterized LOC116406561 Neighboring gene U5 spliceosomal RNA Neighboring gene U5 spliceosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
very low-density lipoprotein receptor
Names
vitellogenin receptor

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    128058687..128099846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004910790.4 → XP_004910847.1  very low-density lipoprotein receptor isoform X2

    UniProtKB/TrEMBL
    A0A6I8RJ65, A0A8J0QZY3
    Related
    ENSXETP00000081848.2, ENSXETT00000070092.2
    Conserved Domains (7) summary
    smart00192
    Location:190 → 222
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:505 → 547
    LY; Low-density lipoprotein-receptor YWTD domain
    smart00179
    Location:394 → 424
    EGF_CA; Calcium-binding EGF-like domain
    cd00112
    Location:31 → 65
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00057
    Location:151 → 186
    Ldl_recept_a; Low-density lipoprotein receptor domain class A
    pfam14670
    Location:358 → 392
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl39070
    Location:655 → 694
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B

  2. XM_002934177.5 → XP_002934223.1  very low-density lipoprotein receptor isoform X1

    UniProtKB/TrEMBL
    A0A8J0QL29, F7CYF4
    Related
    ENSXETP00000025606.5, ENSXETT00000025606.5
    Conserved Domains (7) summary
    smart00192
    Location:190 → 222
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:505 → 547
    LY; Low-density lipoprotein-receptor YWTD domain
    smart00179
    Location:394 → 424
    EGF_CA; Calcium-binding EGF-like domain
    cd00112
    Location:31 → 65
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00057
    Location:151 → 186
    Ldl_recept_a; Low-density lipoprotein receptor domain class A
    pfam14670
    Location:358 → 392
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl39070
    Location:655 → 694
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.