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Ms4a6c membrane-spanning 4-domains, subfamily A, member 6C [ Mus musculus (house mouse) ]

Gene ID: 73656, updated on 23-Jun-2021

Summary

Official Symbol
Ms4a6cprovided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 6Cprovided by MGI
Primary source
MGI:MGI:2385644
See related
Ensembl:ENSMUSG00000079419
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2200009H22Rik; 2210417N07Rik
Expression
Broad expression in spleen adult (RPKM 3.1), mammary gland adult (RPKM 1.9) and 20 other tissues See more
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Genomic context

See Ms4a6c in Genome Data Viewer
Location:
19; 19 A
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11446718..11464433)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11469353..11487182)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11543858..11556687)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 4B Neighboring gene expressed sequence BE692007 Neighboring gene predicted gene 8369 Neighboring gene membrane-spanning 4-domains, subfamily A, member 6B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General protein information

Preferred Names
membrane-spanning 4-domains subfamily A member 6C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166376.1NP_001159848.1  membrane-spanning 4-domains subfamily A member 6C isoform 2

    See identical proteins and their annotated locations for NP_001159848.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences in the presence and absence of exons at its 3' end, compared to variant 1. These differences produce a unique 3' coding region and 3' UTR, compared to variant 1. The encoded protein (isoform 2) is shorter than isoform 1.
    Source sequence(s)
    BC062247, BY164174
    UniProtKB/Swiss-Prot
    Q99N08
    UniProtKB/TrEMBL
    Q6P6F8
    Related
    ENSMUST00000187462.2
    Conserved Domains (1) summary
    pfam04103
    Location:4795
    CD20; CD20-like family
  2. NM_028595.4NP_082871.2  membrane-spanning 4-domains subfamily A member 6C isoform 1

    See identical proteins and their annotated locations for NP_082871.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK150397, AK152258, BY164174, BY691481
    Consensus CDS
    CCDS50395.1
    UniProtKB/Swiss-Prot
    Q99N08
    Related
    ENSMUSP00000132425.2, ENSMUST00000165310.3
    Conserved Domains (1) summary
    pfam04103
    Location:47207
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11446718..11464433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527381.5XP_006527444.1  membrane-spanning 4-domains subfamily A member 6C isoform X1

    Conserved Domains (1) summary
    pfam04103
    Location:50207
    CD20; CD20-like family

RNA

  1. XR_877690.3 RNA Sequence

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