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Atp6v1d ATPase, H+ transporting, lysosomal V1 subunit D [ Mus musculus (house mouse) ]

Gene ID: 73834, updated on 29-Jun-2021

Summary

Official Symbol
Atp6v1dprovided by MGI
Official Full Name
ATPase, H+ transporting, lysosomal V1 subunit Dprovided by MGI
Primary source
MGI:MGI:1921084
See related
Ensembl:ENSMUSG00000021114
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
VA; Vm; Atp; VATD; Vma8; Atp6m; 1110004P10Rik
Expression
Broad expression in cortex adult (RPKM 56.2), frontal lobe adult (RPKM 53.1) and 22 other tissues See more
Orthologs
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Genomic context

See Atp6v1d in Genome Data Viewer
Location:
12 C3; 12 35.51 cM
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (78889756..78908810, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (78842982..78862008, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (79943969..79962625, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 71, member D Neighboring gene protein associated with LIN7 1, MAGUK family member Neighboring gene eukaryotic translation initiation factor 2, subunit 1 alpha Neighboring gene pleckstrin 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATPase-coupled transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables proton-transporting ATPase activity, rotational mechanism IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
 
involved_in cilium assembly ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in protein localization to cilium ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
colocalizes_with centrosome ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with cilium ISO
Inferred from Sequence Orthology
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
part_of proton-transporting V-type ATPase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of proton-transporting V-type ATPase complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
V-type proton ATPase subunit D
Names
ATPase, H+ transporting lysosomal (vacuolar proton pump)
ATPase, H+ transporting, V1 subunit D
ATPase, H+ transporting, lysosomal 34kD, V1 subunit D
V-ATPase 28 kDa accessory protein
V-ATPase subunit D
lysosomal 34kDa
vacuolar proton pump subunit D
NP_076210.1
XP_030102816.1
XP_036013525.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023721.2NP_076210.1  V-type proton ATPase subunit D

    See identical proteins and their annotated locations for NP_076210.1

    Status: VALIDATED

    Source sequence(s)
    AK147910, BY096594
    Consensus CDS
    CCDS26002.1
    UniProtKB/Swiss-Prot
    P57746
    UniProtKB/TrEMBL
    Q3U861
    Related
    ENSMUSP00000021536.8, ENSMUST00000021536.9
    Conserved Domains (1) summary
    pfam01813
    Location:17202
    ATP-synt_D; ATP synthase subunit D

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    78889756..78908810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157632.1XP_036013525.1  V-type proton ATPase subunit D isoform X2

    Conserved Domains (1) summary
    pfam01813
    Location:1184
    ATP-synt_D; ATP synthase subunit D
  2. XM_030246956.2XP_030102816.1  V-type proton ATPase subunit D isoform X1

    Conserved Domains (1) summary
    pfam01813
    Location:17202
    ATP-synt_D; ATP synthase subunit D
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