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D3Ertd751e DNA segment, Chr 3, ERATO Doi 751, expressed [ Mus musculus (house mouse) ]

Gene ID: 73852, updated on 5-Mar-2024

Summary

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Official Symbol
D3Ertd751eprovided by MGI
Official Full Name
DNA segment, Chr 3, ERATO Doi 751, expressedprovided by MGI
Primary source
MGI:MGI:1289213
See related
Ensembl:ENSMUSG00000025766 AllianceGenome:MGI:1289213
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810009O15Rik; 4930415G15Rik
Summary
Orthologous to human C4orf33 (chromosome 4 open reading frame 33). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 1.9), CNS E11.5 (RPKM 1.8) and 25 other tissues See more
Orthologs
human all
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Genomic context

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Location:
3 B; 3 19.96 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (41697031..41757930)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (41742606..41803307)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118568628 Neighboring gene STARR-seq mESC enhancer starr_07506 Neighboring gene jade family PHD finger 1 Neighboring gene STARR-seq mESC enhancer starr_07507 Neighboring gene STARR-seq mESC enhancer starr_07508 Neighboring gene STARR-seq mESC enhancer starr_07509 Neighboring gene STARR-positive B cell enhancer mm9_chr3:41546357-41546658 Neighboring gene sodium channel and clathrin linker 1 Neighboring gene STARR-seq mESC enhancer starr_07510 Neighboring gene STARR-seq mESC enhancer starr_07511 Neighboring gene heat shock protein 8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_07512 Neighboring gene STARR-seq mESC enhancer starr_07513 Neighboring gene STARR-seq mESC enhancer starr_07515 Neighboring gene predicted gene, 54208

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0462 protein C4orf33 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099785.1 → NP_001093255.1  UPF0462 protein C4orf33 homolog isoform a

    See identical proteins and their annotated locations for NP_001093255.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate 5' non-coding exon, compared to variant 1. Both variants 1 and 2 encode the same isoform (a).
    Source sequence(s)
    AK085404, AK138405
    Consensus CDS
    CCDS17332.1
    UniProtKB/Swiss-Prot
    Q8BGN2, Q8C8S9, Q9CZE4, Q9D5M7
    Related
    ENSMUSP00000103700.3, ENSMUST00000108065.9
    Conserved Domains (1) summary
    cl14783
    Location:49 → 171
    DOMON_like; Domon-like ligand-binding domains

  2. NM_001291048.1 → NP_001277977.1  UPF0462 protein C4orf33 homolog isoform c

    See identical proteins and their annotated locations for NP_001277977.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in both UTRs, lacks two in-frame exons and uses an alternate splice site in the coding region which results in a frameshift compared to variant 1. The encoded isoform (c) is shorter and has a distinct C-terminus, compared to isoform a.
    Source sequence(s)
    AC102795, AK012700
    Consensus CDS
    CCDS71239.1
    UniProtKB/TrEMBL
    A0A0R4J1L5
    Related
    ENSMUSP00000112558.2, ENSMUST00000119572.8

  3. NM_027271.1 → NP_081547.1  UPF0462 protein C4orf33 homolog isoform b

    See identical proteins and their annotated locations for NP_081547.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two alternate in-frame exons in the 3' coding region, compared to variant 1. The resulting protein (isoform b) is shorter than isoform a.
    Source sequence(s)
    AK138405, BC062244
    Consensus CDS
    CCDS50900.1
    UniProtKB/Swiss-Prot
    Q8BGN2
    Related
    ENSMUSP00000142092.2, ENSMUST00000192193.6

  4. NM_028667.3 → NP_082943.2  UPF0462 protein C4orf33 homolog isoform a

    See identical proteins and their annotated locations for NP_082943.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Both variants 1 and 2 encode the same isoform.
    Source sequence(s)
    AK015146, AK138405
    Consensus CDS
    CCDS17332.1
    UniProtKB/Swiss-Prot
    Q8BGN2, Q8C8S9, Q9CZE4, Q9D5M7
    Related
    ENSMUSP00000119049.2, ENSMUST00000146165.8
    Conserved Domains (1) summary
    cl14783
    Location:49 → 171
    DOMON_like; Domon-like ligand-binding domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    41697031..41757930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036163355.1 → XP_036019248.1  UPF0462 protein C4orf33 homolog isoform X4

  2. XM_036163354.1 → XP_036019247.1  UPF0462 protein C4orf33 homolog isoform X1

    Conserved Domains (1) summary
    cl14783
    Location:49 → 171
    DOMON_like; Domon-like ligand-binding domains

  3. XM_011239973.3 → XP_011238275.1  UPF0462 protein C4orf33 homolog isoform X3

    See identical proteins and their annotated locations for XP_011238275.1

    Conserved Domains (1) summary
    cl14783
    Location:49 → 171
    DOMON_like; Domon-like ligand-binding domains

  4. XM_030252844.2 → XP_030108704.1  UPF0462 protein C4orf33 homolog isoform X6

  5. XM_011239972.3 → XP_011238274.1  UPF0462 protein C4orf33 homolog isoform X2

    Conserved Domains (1) summary
    cl14783
    Location:49 → 171
    DOMON_like; Domon-like ligand-binding domains

  6. XM_036163356.1 → XP_036019249.1  UPF0462 protein C4orf33 homolog isoform X5

    Conserved Domains (1) summary
    cl14783
    Location:49 → 171
    DOMON_like; Domon-like ligand-binding domains

  7. XM_036163358.1 → XP_036019251.1  UPF0462 protein C4orf33 homolog isoform X7

    UniProtKB/TrEMBL
    A0A0R4J1L5

  8. XM_036163357.1 → XP_036019250.1  UPF0462 protein C4orf33 homolog isoform X5

    Conserved Domains (1) summary
    cl14783
    Location:49 → 171
    DOMON_like; Domon-like ligand-binding domains

RNA

  1. XR_867177.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BGN2.1 GenPept UniProtKB/Swiss-Prot:Q8BGN2

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