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TBX3 T-box transcription factor 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 740308, updated on 29-Mar-2024

Summary

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Official Symbol
TBX3provided by VGNC
Official Full Name
T-box transcription factor 3provided by VGNC
Primary source
VGNC:VGNC:5613
Locus tag
CK820_G0015826
See related
Ensembl:ENSPTRG00000023749
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (121464508..121478656, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (120073593..120087719, complement)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene osteoclast-stimulating factor 1-like Neighboring gene uncharacterized LOC107967796 Neighboring gene small nucleolar RNA SNORA27 Neighboring gene uncharacterized LOC112205016

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX3
Names
T-box 3 (ulnar mammary syndrome)
T-box 3 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    121464508..121478656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001154426.7 → XP_001154426.1  T-box transcription factor TBX3 isoform X1

    See identical proteins and their annotated locations for XP_001154426.1

    UniProtKB/TrEMBL
    A0A2I3T7H8, A0A2J8MY88, A0A6D2XRM3
    Related
    ENSPTRP00000084833.1
    Conserved Domains (2) summary
    pfam00907
    Location:105 → 305
    T-box; T-box
    pfam12598
    Location:323 → 403
    TBX; T-box transcription factor

  2. XM_001154479.7 → XP_001154479.1  T-box transcription factor TBX3 isoform X2

    See identical proteins and their annotated locations for XP_001154479.1

    UniProtKB/TrEMBL
    A0A2J8MY89, A0A6D2XAI6, H2R1C1, K7BPU9
    Related
    ENSPTRP00000042117.2
    Conserved Domains (2) summary
    pfam00907
    Location:105 → 285
    T-box; T-box
    pfam12598
    Location:303 → 383
    TBX; T-box transcription factor
Nucleotide Protein
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