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Acbd5 acyl-Coenzyme A binding domain containing 5 [ Mus musculus (house mouse) ]

Gene ID: 74159, updated on 25-Nov-2021

Summary

Official Symbol
Acbd5provided by MGI
Official Full Name
acyl-Coenzyme A binding domain containing 5provided by MGI
Primary source
MGI:MGI:1921409
See related
Ensembl:ENSMUSG00000026781
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1300014E15Rik
Expression
Ubiquitous expression in cerebellum adult (RPKM 8.7), frontal lobe adult (RPKM 8.4) and 28 other tissues See more
Orthologs
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Genomic context

See Acbd5 in Genome Data Viewer
Location:
2; 2 A3
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (22958178..23004525)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (23068166..23114513)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (22923721..22970033)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene prenyl (solanesyl) diphosphate synthase, subunit 1 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene abl interactor 1 Neighboring gene predicted gene, 52502 Neighboring gene microtubule associated serine/threonine kinase-like Neighboring gene YME1-like 1 (S. cerevisiae)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC90942

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables fatty-acyl-CoA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables fatty-acyl-CoA binding IEA
Inferred from Electronic Annotation
more info
 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within autophagy IEA
Inferred from Electronic Annotation
more info
 
involved_in autophagy of peroxisome ISO
Inferred from Sequence Orthology
more info
 
involved_in fatty acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in peroxisome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in peroxisome ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
acyl-CoA-binding domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102436.1NP_001095906.1  acyl-CoA-binding domain-containing protein 5 isoform d

    See identical proteins and their annotated locations for NP_001095906.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence, lacks an alternate in-frame exon, and uses an alternate in-frame splice junction compared to variant 5. The resulting isoform (c) is shorter at the N-terminus and lacks two alternate internal segments compared to isoform e.
    Source sequence(s)
    AK050450, BC090641, BY070285
    Consensus CDS
    CCDS50516.1
    UniProtKB/Swiss-Prot
    Q5XG73
    UniProtKB/TrEMBL
    Q5CZX6
    Related
    ENSMUSP00000154023.2, ENSMUST00000227809.2
    Conserved Domains (1) summary
    cd00435
    Location:996
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  2. NM_001102437.1NP_001095907.1  acyl-CoA-binding domain-containing protein 5 isoform a precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks an alternate in-frame exon compared to variant 5. The resulting isoform (a) has the same N- and C-termini but is shorter compared to isoform e.
    Source sequence(s)
    AK005001, AK147839, BC090641, BY126800
    Consensus CDS
    CCDS57156.1
    UniProtKB/Swiss-Prot
    Q5XG73
    UniProtKB/TrEMBL
    E9QNH7, Q5CZX6
    Related
    ENSMUSP00000110175.3, ENSMUST00000114529.10
    Conserved Domains (1) summary
    cd00435
    Location:45132
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  3. NM_001102438.1NP_001095908.1  acyl-CoA-binding domain-containing protein 5 isoform b precursor

    See identical proteins and their annotated locations for NP_001095908.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon and uses an alternate in-frame splice junction compared to variant 5. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform e.
    Source sequence(s)
    AK050450, AK147839, BC090641, BY126800
    Consensus CDS
    CCDS50514.1
    UniProtKB/Swiss-Prot
    Q5XG73
    UniProtKB/TrEMBL
    Q5CZX6
    Related
    ENSMUSP00000110172.2, ENSMUST00000114526.9
    Conserved Domains (1) summary
    cd00435
    Location:45132
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  4. NM_001355637.1NP_001342566.1  acyl-CoA-binding domain-containing protein 5 isoform e precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) represents the longest transcript and encodes the longest isoform (e).
    Source sequence(s)
    AL845257
    Consensus CDS
    CCDS89434.1
    Related
    ENSMUSP00000154043.2, ENSMUST00000228050.2
    Conserved Domains (1) summary
    cd00435
    Location:45132
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  5. NM_001355638.1NP_001342567.1  acyl-CoA-binding domain-containing protein 5 isoform f precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (f) has the same N- and C-termini but is 1 aa shorter compared to isoform e.
    Source sequence(s)
    AL845257
    Consensus CDS
    CCDS89435.1
    Related
    ENSMUSP00000154188.2, ENSMUST00000226571.2
    Conserved Domains (1) summary
    cd00435
    Location:45132
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  6. NM_001355639.1NP_001342568.1  acyl-CoA-binding domain-containing protein 5 isoform g

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR and coding sequence and uses an alternate in-frame splice junction compared to variant 5. The resulting isoform (g) is shorter at the N-terminus and lacks an internal single aa compared to isoform e.
    Source sequence(s)
    AL845257
    Consensus CDS
    CCDS89437.1
    Related
    ENSMUSP00000154518.2, ENSMUST00000227663.2
    Conserved Domains (1) summary
    cd00435
    Location:996
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  7. NM_001355641.1NP_001342570.1  acyl-CoA-binding domain-containing protein 5 isoform h

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) lacks an alternate exon in the 5' end compared to variant 5. The resulting isoform (h) is shorter at the N-terminus compared to isoform e.
    Source sequence(s)
    AL845257
    Conserved Domains (1) summary
    cl00221
    Location:122
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  8. NM_001355642.1NP_001342571.1  acyl-CoA-binding domain-containing protein 5 isoform i

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) differs in the 5' UTR and coding sequence and lacks an alternate in-frame exon compared to variant 5. The resulting isoform (i) is shorter at the N-terminus and lacks an alternate segment compared to isoform e.
    Source sequence(s)
    AL845257
    Conserved Domains (1) summary
    cl00221
    Location:122
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  9. NM_028793.3NP_083069.1  acyl-CoA-binding domain-containing protein 5 isoform c

    See identical proteins and their annotated locations for NP_083069.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence and lacks an alternate in-frame exon compared to variant 5. The resulting isoform (c) is shorter at the N-terminus and lacks an alternate internal segment compared to isoform e.
    Source sequence(s)
    AK050450, BC090641, BY070285
    Consensus CDS
    CCDS50515.1
    UniProtKB/Swiss-Prot
    Q5XG73
    UniProtKB/TrEMBL
    Q5CZX6
    Related
    ENSMUSP00000028121.9, ENSMUST00000028121.15
    Conserved Domains (1) summary
    cd00435
    Location:996
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...

RNA

  1. NR_149742.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) differs in the 5' end and has multiple internal differences compared to variant 5. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AL845257

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    22958178..23004525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006498385.4XP_006498448.1  acyl-CoA-binding domain-containing protein 5 isoform X1

    Related
    ENSMUSP00000117325.3, ENSMUST00000155602.4
    Conserved Domains (1) summary
    cd00435
    Location:996
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  2. XM_030252127.2XP_030107987.1  acyl-CoA-binding domain-containing protein 5 isoform X2

    Conserved Domains (1) summary
    cl00221
    Location:122
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  3. XM_036162633.1XP_036018526.1  acyl-CoA-binding domain-containing protein 5 isoform X4

    Conserved Domains (1) summary
    cl00221
    Location:122
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  4. XM_030252128.2XP_030107988.1  acyl-CoA-binding domain-containing protein 5 isoform X3

    Conserved Domains (1) summary
    cl00221
    Location:122
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  5. XM_030252126.1XP_030107986.1  acyl-CoA-binding domain-containing protein 5 isoform X2

    Conserved Domains (1) summary
    cl00221
    Location:122
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
  6. XM_030252129.1XP_030107989.1  acyl-CoA-binding domain-containing protein 5 isoform X4

    Conserved Domains (1) summary
    cl00221
    Location:122
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...
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