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Cldnd2 claudin domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 74276, updated on 23-Jun-2021

Summary

Official Symbol
Cldnd2provided by MGI
Official Full Name
claudin domain containing 2provided by MGI
Primary source
MGI:MGI:1921526
See related
Ensembl:ENSMUSG00000038973
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700071E18Rik
Expression
Restricted expression toward testis adult (RPKM 34.5) See more
Orthologs
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Genomic context

See Cldnd2 in Genome Data Viewer
Location:
7; 7 B3
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (43090164..43093554)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (43440740..43444130)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (50696186..50698690)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene lens intrinsic membrane protein 2 Neighboring gene natural killer cell group 7 sequence Neighboring gene electron transferring flavoprotein, beta polypeptide Neighboring gene microRNA 7051 Neighboring gene predicted gene, 39000 Neighboring gene V-set and immunoglobulin domain containing 10 like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
claudin domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028849.1NP_083125.1  claudin domain-containing protein 2 precursor

    See identical proteins and their annotated locations for NP_083125.1

    Status: PROVISIONAL

    Source sequence(s)
    BC128277
    Consensus CDS
    CCDS39929.1
    UniProtKB/Swiss-Prot
    Q9D9H2
    UniProtKB/TrEMBL
    A1A539
    Related
    ENSMUSP00000037980.2, ENSMUST00000040227.3
    Conserved Domains (1) summary
    cl21598
    Location:23144
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    43090164..43093554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312350.2XP_017167839.1  claudin domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:23140
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  2. XM_030243028.2XP_030098888.1  claudin domain-containing protein 2 isoform X2

    Conserved Domains (1) summary
    cl21598
    Location:23144
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  3. XM_017312349.2XP_017167838.1  claudin domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:23140
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  4. XM_030243029.1XP_030098889.1  claudin domain-containing protein 2 isoform X3

    Conserved Domains (1) summary
    cl21598
    Location:23140
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  5. XM_030243031.1XP_030098891.1  claudin domain-containing protein 2 isoform X5

    Conserved Domains (1) summary
    cl21598
    Location:23144
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  6. XM_030243030.1XP_030098890.1  claudin domain-containing protein 2 isoform X4

    Conserved Domains (1) summary
    cl21598
    Location:23144
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
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