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Lrrc17 leucine rich repeat containing 17 [ Mus musculus (house mouse) ]

Gene ID: 74511, updated on 13-Jul-2021

Summary

Official Symbol
Lrrc17provided by MGI
Official Full Name
leucine rich repeat containing 17provided by MGI
Primary source
MGI:MGI:1921761
See related
Ensembl:ENSMUSG00000039883
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
37kD; 37kDa; P37nb; 4833425M04Rik; 6130400C22Rik
Expression
Biased expression in limb E14.5 (RPKM 31.9), subcutaneous fat pad adult (RPKM 13.0) and 10 other tissues See more
Orthologs
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Genomic context

See Lrrc17 in Genome Data Viewer
Location:
5; 5 A3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (21748525..21780909)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (21543527..21575911)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (21049345..21081729)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 146 Neighboring gene fibrinogen-like protein 2 Neighboring gene family with sequence similarity 185, member A Neighboring gene F-box and leucine-rich repeat protein 13 Neighboring gene predicted gene 6543 Neighboring gene protein archease pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
leucine-rich repeat-containing protein 17
Names
37 kDa leucine-rich repeat (LRR) protein
leucine-rich repeat (LRR) protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028977.1NP_083253.1  leucine-rich repeat-containing protein 17 precursor

    See identical proteins and their annotated locations for NP_083253.1

    Status: VALIDATED

    Source sequence(s)
    AK018071, CD741871, CF914556
    Consensus CDS
    CCDS51428.1
    UniProtKB/Swiss-Prot
    Q9CXD9
    Related
    ENSMUSP00000038569.5, ENSMUST00000035651.6
    Conserved Domains (5) summary
    cd00116
    Location:270352
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:85108
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:296334
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:274330
    LRR_8; Leucine rich repeat
    cl15307
    Location:165201
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    21748525..21780909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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