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PHF5A PHD finger protein 5A [ Pan troglodytes (chimpanzee) ]

Gene ID: 745456, updated on 29-Mar-2024

Summary

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Official Symbol
PHF5Aprovided by VGNC
Official Full Name
PHD finger protein 5Aprovided by VGNC
Primary source
VGNC:VGNC:5294
Locus tag
CK820_G0027528
See related
Ensembl:ENSPTRG00000014427
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 23 NC_086016.1 (43453684..43462774, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 22 NC_072420.1 (36486060..36495112, complement)

Chromosome 23 - NC_086016.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129138448 Neighboring gene U6 spliceosomal RNA Neighboring gene TEF transcription factor, PAR bZIP family member Neighboring gene transducer of ERBB2, 2 Neighboring gene aconitase 2 Neighboring gene RNA polymerase III subunit H Neighboring gene uncharacterized LOC107970256 Neighboring gene cold shock domain containing C2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger-like domain-containing protein 5A
Names
PHD-finger 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086016.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    43453684..43462774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003317262.7 → XP_003317310.1  PHD finger-like domain-containing protein 5A isoform X2

    See identical proteins and their annotated locations for XP_003317310.1

    UniProtKB/TrEMBL
    A0A2J8LN38, A0A6D2XB83, H2QLS3
    Related
    ENSPTRP00000024852.2
    Conserved Domains (1) summary
    pfam03660
    Location:1 → 104
    PHF5; PHF5-like protein

  2. XM_054675550.2 → XP_054531525.1  PHD finger-like domain-containing protein 5A isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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