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Fam71e1 family with sequence similarity 71, member E1 [ Mus musculus (house mouse) ]

Gene ID: 75538, updated on 23-Jun-2021

Summary

Official Symbol
Fam71e1provided by MGI
Official Full Name
family with sequence similarity 71, member E1provided by MGI
Primary source
MGI:MGI:1922788
See related
Ensembl:ENSMUSG00000051113
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GARI-L5; 0610007G24Rik; 1700021N13Rik; 1700021P22Rik
Expression
Biased expression in testis adult (RPKM 95.9) and mammary gland adult (RPKM 4.1) See more
Orthologs
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Genomic context

See Fam71e1 in Genome Data Viewer
Location:
7; 7 B3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (44145923..44153690)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (44496499..44504266)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (51751958..51756504)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Josephin domain containing 2 Neighboring gene microRNA 7052 Neighboring gene RIKEN cDNA 5430431A17 gene Neighboring gene ER membrane protein complex subunit 10 Neighboring gene myosin binding protein C, fast-type Neighboring gene Spi-B transcription factor (Spi-1/PU.1 related) Neighboring gene polymerase (DNA directed), delta 1, catalytic subunit Neighboring gene microRNA 7053

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC161173

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
protein FAM71E1
Names
Golgi-associated Rab2B interactor-like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357650.2NP_001344579.1  protein FAM71E1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC149607
    Conserved Domains (1) summary
    pfam12480
    Location:2892
    DUF3699; Protein of unknown function (DUF3699)
  2. NM_001357651.2NP_001344580.1  protein FAM71E1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC149607
    Conserved Domains (1) summary
    pfam12480
    Location:113177
    DUF3699; Protein of unknown function (DUF3699)
  3. NM_001368290.1NP_001355219.1  protein FAM71E1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC149607
  4. NM_001368291.1NP_001355220.1  protein FAM71E1 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC149607
  5. NM_001368292.1NP_001355221.1  protein FAM71E1 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC149607
    Conserved Domains (1) summary
    pfam12480
    Location:261
    DUF3699; Protein of unknown function (DUF3699)
  6. NM_028169.2NP_082445.1  protein FAM71E1 isoform 1

    See identical proteins and their annotated locations for NP_082445.1

    Status: VALIDATED

    Source sequence(s)
    AC149607
    Consensus CDS
    CCDS52232.1
    UniProtKB/Swiss-Prot
    A1L3C1
    Related
    ENSMUSP00000103560.4, ENSMUST00000107927.5
    Conserved Domains (1) summary
    pfam12480
    Location:93158
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    44145923..44153690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243055.2XP_030098915.1  protein FAM71E1 isoform X10

    Conserved Domains (1) summary
    pfam12480
    Location:261
    DUF3699; Protein of unknown function (DUF3699)
  2. XM_006541242.3XP_006541305.1  protein FAM71E1 isoform X1

    Conserved Domains (1) summary
    pfam12480
    Location:118177
    DUF3699; Protein of unknown function (DUF3699)
  3. XM_006541243.4XP_006541306.1  protein FAM71E1 isoform X3

    UniProtKB/TrEMBL
    A0A0U1RNU0
    Related
    ENSMUSP00000145700.2, ENSMUST00000205359.2
    Conserved Domains (1) summary
    pfam12480
    Location:99158
    DUF3699; Protein of unknown function (DUF3699)
  4. XM_036153517.1XP_036009410.1  protein FAM71E1 isoform X7

    Conserved Domains (1) summary
    pfam12480
    Location:99158
    DUF3699; Protein of unknown function (DUF3699)
  5. XM_036153516.1XP_036009409.1  protein FAM71E1 isoform X5

    Conserved Domains (1) summary
    pfam12480
    Location:99158
    DUF3699; Protein of unknown function (DUF3699)
  6. XM_030243057.2XP_030098917.1  protein FAM71E1 isoform X12

    Conserved Domains (1) summary
    pfam12480
    Location:3392
    DUF3699; Protein of unknown function (DUF3699)
  7. XM_030243059.2XP_030098919.1  protein FAM71E1 isoform X14

    Conserved Domains (1) summary
    pfam12480
    Location:261
    DUF3699; Protein of unknown function (DUF3699)
  8. XM_036153519.1XP_036009412.1  protein FAM71E1 isoform X15

    Conserved Domains (1) summary
    pfam12480
    Location:261
    DUF3699; Protein of unknown function (DUF3699)
  9. XM_030243058.2XP_030098918.1  protein FAM71E1 isoform X13

    Conserved Domains (1) summary
    pfam12480
    Location:261
    DUF3699; Protein of unknown function (DUF3699)
  10. XM_006541248.3XP_006541311.1  protein FAM71E1 isoform X9

    Conserved Domains (1) summary
    pfam12480
    Location:3392
    DUF3699; Protein of unknown function (DUF3699)
  11. XM_036153518.1XP_036009411.1  protein FAM71E1 isoform X11

    Conserved Domains (1) summary
    pfam12480
    Location:3392
    DUF3699; Protein of unknown function (DUF3699)
  12. XM_011250907.4XP_011249209.1  protein FAM71E1 isoform X8

    Conserved Domains (1) summary
    pfam12480
    Location:118177
    DUF3699; Protein of unknown function (DUF3699)
  13. XM_036153515.1XP_036009408.1  protein FAM71E1 isoform X2

    Conserved Domains (1) summary
    pfam12480
    Location:118177
    DUF3699; Protein of unknown function (DUF3699)
  14. XM_006541244.5XP_006541307.1  protein FAM71E1 isoform X4

    Conserved Domains (1) summary
    pfam12480
    Location:118177
    DUF3699; Protein of unknown function (DUF3699)
  15. XM_006541245.5XP_006541308.1  protein FAM71E1 isoform X6

    Conserved Domains (1) summary
    pfam12480
    Location:118177
    DUF3699; Protein of unknown function (DUF3699)
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