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Prr29 proline rich 29 [ Mus musculus (house mouse) ]

Gene ID: 75573, updated on 5-Mar-2024

Summary

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Official Symbol
Prr29provided by MGI
Official Full Name
proline rich 29provided by MGI
Primary source
MGI:MGI:1922823
See related
Ensembl:ENSMUSG00000009210 AllianceGenome:MGI:1922823
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310007L24Rik
Summary
Orthologous to human PRR29 (proline rich 29). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in ovary adult (RPKM 17.3), lung adult (RPKM 9.1) and 4 other tissues See more
Orthologs
human all
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Genomic context

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See Prr29 in Genome Data Viewer
Location:
11 E1; 11 69.05 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (106255838..106267940)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (106374762..106377114)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10721 Neighboring gene STARR-seq mESC enhancer starr_30919 Neighboring gene STARR-positive B cell enhancer ABC_E7081 Neighboring gene growth hormone Neighboring gene CD79B antigen Neighboring gene sodium channel, voltage-gated, type IV, alpha Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:106235839-106236093 Neighboring gene STARR-positive B cell enhancer ABC_E10722 Neighboring gene intercellular adhesion molecule 2 Neighboring gene endoplasmic reticulum to nucleus signalling 1 Neighboring gene STARR-positive B cell enhancer ABC_E9845 Neighboring gene STARR-positive B cell enhancer ABC_E10723 Neighboring gene STARR-positive B cell enhancer ABC_E7082

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
proline-rich protein 29
NP_083621.1
XP_006534451.1
XP_036012949.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029345.1 → NP_083621.1  proline-rich protein 29

    See identical proteins and their annotated locations for NP_083621.1

    Status: VALIDATED

    Source sequence(s)
    AK009213, AK153786, BC116233
    Consensus CDS
    CCDS48962.1
    UniProtKB/Swiss-Prot
    B1ARI9, Q9D7I4
    UniProtKB/TrEMBL
    A0A087WQW1
    Related
    ENSMUSP00000102429.2, ENSMUST00000106816.8
    Conserved Domains (1) summary
    pfam15248
    Location:42 → 87
    DUF4587; Domain of unknown function (DUF4587)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    106255838..106267940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157056.1 → XP_036012949.1  proline-rich protein 29 isoform X1

    Related
    ENSMUSP00000009354.4, ENSMUST00000009354.10
    Conserved Domains (1) summary
    pfam15248
    Location:1 → 59
    DUF4587; Domain of unknown function (DUF4587)

  2. XM_006534388.3 → XP_006534451.1  proline-rich protein 29 isoform X2

    UniProtKB/TrEMBL
    A0A087WQH2
    Related
    ENSMUSP00000140194.2, ENSMUST00000188561.7
    Conserved Domains (1) summary
    pfam15248
    Location:42 → 88
    DUF4587; Domain of unknown function (DUF4587)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B1ARI9.1 GenPept UniProtKB/Swiss-Prot:B1ARI9

Gene LinkOut

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