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Calml4 calmodulin-like 4 [ Mus musculus (house mouse) ]

Gene ID: 75600, updated on 23-Jun-2021

Summary

Official Symbol
Calml4provided by MGI
Official Full Name
calmodulin-like 4provided by MGI
Primary source
MGI:MGI:1922850
See related
Ensembl:ENSMUSG00000032246
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2010002G05Rik
Expression
Biased expression in kidney adult (RPKM 59.1), large intestine adult (RPKM 43.2) and 5 other tissues See more
Orthologs
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Genomic context

See Calml4 in Genome Data Viewer
Location:
9; 9 B
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (62765068..62783203)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (62857472..62875921)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (62705911..62723725)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene fem 1 homolog b Neighboring gene ribsomal protein S2 pseudogene Neighboring gene ceroid-lipofuscinosis, neuronal 6 Neighboring gene protein inhibitor of activated STAT 1 Neighboring gene predicted gene, 35574 Neighboring gene predicted gene, 24526

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables enzyme regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
calmodulin-like protein 4
Names
CALM-Rel
calmodulin-related

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102468.1NP_001095938.1  calmodulin-like protein 4 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
    Source sequence(s)
    BY097052, CO039047
    Consensus CDS
    CCDS52827.1
    UniProtKB/TrEMBL
    E9Q1L1
    Related
    ENSMUSP00000132298.2, ENSMUST00000163820.3
    Conserved Domains (1) summary
    cl08302
    Location:47100
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
  2. NM_138304.2NP_612177.1  calmodulin-like protein 4 isoform a

    See identical proteins and their annotated locations for NP_612177.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC164614
    Consensus CDS
    CCDS40664.1
    UniProtKB/Swiss-Prot
    Q91WQ9
    Related
    ENSMUSP00000034777.7, ENSMUST00000034777.14
    Conserved Domains (3) summary
    PTZ00184
    Location:1144
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:1274
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl08302
    Location:94147
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    62765068..62783203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017313679.3XP_017169168.1  calmodulin-like protein 4 isoform X3

    Conserved Domains (1) summary
    PTZ00184
    Location:3199
    PTZ00184; calmodulin; Provisional
  2. XM_006511529.5XP_006511592.1  calmodulin-like protein 4 isoform X1

    Conserved Domains (1) summary
    PTZ00184
    Location:25146
    PTZ00184; calmodulin; Provisional
  3. XM_006511532.2XP_006511595.1  calmodulin-like protein 4 isoform X4

    See identical proteins and their annotated locations for XP_006511595.1

    UniProtKB/Swiss-Prot
    Q91WQ9
    Related
    ENSMUSP00000150355.2, ENSMUST00000213643.2
    Conserved Domains (1) summary
    PTZ00184
    Location:172
    PTZ00184; calmodulin; Provisional
  4. XM_006511530.1XP_006511593.1  calmodulin-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A1L1SR54
    Related
    ENSMUSP00000149319.2, ENSMUST00000215968.2
    Conserved Domains (1) summary
    PTZ00184
    Location:1108
    PTZ00184; calmodulin; Provisional
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