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Vsig10l V-set and immunoglobulin domain containing 10 like [ Mus musculus (house mouse) ]

Gene ID: 75690, updated on 23-Jun-2021

Summary

Official Symbol
Vsig10lprovided by MGI
Official Full Name
V-set and immunoglobulin domain containing 10 likeprovided by MGI
Primary source
MGI:MGI:1922940
See related
Ensembl:ENSMUSG00000070604
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in stomach adult (RPKM 12.0), testis adult (RPKM 4.2) and 22 other tissues See more
Orthologs
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Genomic context

See Vsig10l in Genome Data Viewer
Location:
7; 7 B3
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (43112460..43121443)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (43462845..43472019)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (50718521..50727386)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene claudin domain containing 2 Neighboring gene electron transferring flavoprotein, beta polypeptide Neighboring gene microRNA 7051 Neighboring gene predicted gene, 39000 Neighboring gene IgLON family member 5 Neighboring gene RIKEN cDNA 4931406B18 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Clone Names

  • 2210412E05Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
V-set and immunoglobulin domain-containing protein 10-like
Names
ZV-set and immunoglobulin domain containing 10 like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290316.2NP_001277245.1  V-set and immunoglobulin domain-containing protein 10-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC154108
    Consensus CDS
    CCDS85281.1
    UniProtKB/TrEMBL
    A0A0N4SUI1
    Related
    ENSMUSP00000144692.2, ENSMUST00000203769.2
    Conserved Domains (4) summary
    cd00096
    Location:205274
    Ig; Immunoglobulin domain
    smart00410
    Location:298375
    IG_like; Immunoglobulin like
    pfam07679
    Location:187280
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:287375
    Ig_2; Immunoglobulin domain
  2. NM_001368881.1NP_001355810.1  V-set and immunoglobulin domain-containing protein 10-like isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC154108
    Consensus CDS
    CCDS90217.1
    Related
    ENSMUSP00000103611.2, ENSMUST00000107977.4
    Conserved Domains (3) summary
    pfam13895
    Location:388477
    Ig_2; Immunoglobulin domain
    cd00096
    Location:307378
    Ig; Immunoglobulin domain
    pfam07679
    Location:577640
    I-set; Immunoglobulin I-set domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    43112460..43121443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_391405.5 RNA Sequence

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