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4932414N04Rik RIKEN cDNA 4932414N04 gene [ Mus musculus (house mouse) ]

Gene ID: 75721, updated on 8-Feb-2024

Summary

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Official Symbol
4932414N04Rikprovided by MGI
Official Full Name
RIKEN cDNA 4932414N04 geneprovided by MGI
Primary source
MGI:MGI:1922971
See related
Ensembl:ENSMUSG00000079324 AllianceGenome:MGI:1922971
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 8.7) See more
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Genomic context

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Location:
2 C2; 2 39.53 cM
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (68487135..68578876)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (68656791..68748532)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933409G03 gene Neighboring gene predicted gene, 36002 Neighboring gene predicted gene, 36231 Neighboring gene predicted gene, 36174 Neighboring gene predicted gene 13612

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC75721

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183113.3 → NP_898936.1  uncharacterized protein LOC75721

    See identical proteins and their annotated locations for NP_898936.1

    Status: VALIDATED

    Source sequence(s)
    AL844841, AL928873, BX293546
    Consensus CDS
    CCDS50598.1
    UniProtKB/TrEMBL
    H3BLH7, Q8CEQ9
    Related
    ENSMUSP00000135792.3, ENSMUST00000128259.9
    Conserved Domains (1) summary
    pfam12001
    Location:266 → 345
    DUF3496; Domain of unknown function (DUF3496)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    68487135..68578876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500335.3 → XP_006500398.1  uncharacterized protein LOC75721 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:456 → 687
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam12001
    Location:620 → 699
    DUF3496; Domain of unknown function (DUF3496)

  2. XM_017319307.2 → XP_017174796.1  uncharacterized protein LOC75721 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:456 → 687
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam12001
    Location:620 → 699
    DUF3496; Domain of unknown function (DUF3496)

  3. XM_006500336.2 → XP_006500399.1  uncharacterized protein LOC75721 isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:431 → 662
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam12001
    Location:595 → 674
    DUF3496; Domain of unknown function (DUF3496)

  4. XM_017319308.2 → XP_017174797.1  uncharacterized protein LOC75721 isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:430 → 661
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam12001
    Location:594 → 673
    DUF3496; Domain of unknown function (DUF3496)
Nucleotide Protein Strain
Heading Accession and Version

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