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Vmn2r29 vomeronasal 2, receptor 29 [ Mus musculus (house mouse) ]

Gene ID: 76229, updated on 11-Apr-2024

Summary

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Official Symbol
Vmn2r29provided by MGI
Official Full Name
vomeronasal 2, receptor 29provided by MGI
Primary source
MGI:MGI:1923479
See related
Ensembl:ENSMUSG00000095730 Ensembl:ENSMUSG00000110105 AllianceGenome:MGI:1923479
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6430701C03Rik
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in frontal lobe adult (RPKM 1.2), CNS E18 (RPKM 1.1) and 23 other tissues See more
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Genomic context

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See Vmn2r29 in Genome Data Viewer
Location:
7 A1; 7 4.2 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (7215995..7281288, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (7212996..7278289, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 418 Neighboring gene STARR-positive B cell enhancer ABC_E4895 Neighboring gene zinc finger protein 772 Neighboring gene zinc finger protein 772 pseudogene Neighboring gene chloride channel, voltage-sensitive 4 Neighboring gene microRNA 5620 Neighboring gene vomeronasal 2, receptor 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vomeronasal 2, receptor 29
Names
vomeronasal receptor Vmn2r29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113468.1 → NP_001106939.1  vomeronasal 2, receptor 29 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript and encodes the inferred protein product at this locus.
    Source sequence(s)
    AC149056, AC150745
    Consensus CDS
    CCDS51993.1
    UniProtKB/TrEMBL
    K7N652, L7N2D4
    Related
    ENSMUSP00000131990.2, ENSMUST00000170922.2
    Conserved Domains (4) summary
    pfam00003
    Location:599 → 833
    7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
    pfam01094
    Location:75 → 453
    ANF_receptor; Receptor family ligand binding region
    pfam07562
    Location:513 → 564
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cl10011
    Location:39 → 503
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

RNA

  1. NR_003555.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), based on the predominant transcript evidence at the locus, lacks several coding exons, compared to variant 1. The predicted protein would be truncated, compared to the variant 1 product, and most likely not functional. Variant 2 is represented as a non-protein-coding transcript.
    Source sequence(s)
    BC096375, BE987147, BY089007
    Related
    ENSMUST00000209833.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    7215995..7281288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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