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Ndfip2 Nedd4 family interacting protein 2 [ Mus musculus (house mouse) ]

Gene ID: 76273, updated on 16-Oct-2021

Summary

Official Symbol
Ndfip2provided by MGI
Official Full Name
Nedd4 family interacting protein 2provided by MGI
Primary source
MGI:MGI:1923523
See related
Ensembl:ENSMUSG00000053253
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
N4wbp5a; mKIAA1165; 0710001O20Rik; 2810436B12Rik; 9130207N19Rik
Expression
Ubiquitous expression in small intestine adult (RPKM 18.5), colon adult (RPKM 18.3) and 28 other tissues See more
Orthologs
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Genomic context

See Ndfip2 in Genome Data Viewer
Location:
14; 14 E2.3
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (105495975..105546732)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (105258591..105309298)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (105658021..105708490)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene plastin 3 (T-isoform) pseudogene Neighboring gene predicted gene, 22290 Neighboring gene predicted gene, 24207 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene RIKEN cDNA 5430440P10 gene Neighboring gene VISTA enhancer mm1111

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1165

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables WW domain binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables WW domain binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in metal ion transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in negative regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of protein transport ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of transporter activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in positive regulation of protein ubiquitination ISO
Inferred from Sequence Orthology
more info
 
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in vacuolar transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane ISM
Inferred from Sequence Model
more info
PubMed 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
is_active_in perinuclear region of cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
NEDD4 family-interacting protein 2
Names
NEDD4 WW domain-binding protein 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190989.2NP_001177918.1  NEDD4 family-interacting protein 2

    See identical proteins and their annotated locations for NP_001177918.1

    Status: VALIDATED

    Source sequence(s)
    AC141878
    Consensus CDS
    CCDS49560.2
    UniProtKB/TrEMBL
    M0QWK1, Q3V1V0
    Related
    ENSMUSP00000121854.3, ENSMUST00000138283.2
    Conserved Domains (1) summary
    cl21474
    Location:233300
    ABC2_membrane; ABC-2 type transporter
  2. NM_029561.5NP_083837.2  NEDD4 family-interacting protein 2

    See identical proteins and their annotated locations for NP_083837.2

    Status: VALIDATED

    Source sequence(s)
    AC141878
    Consensus CDS
    CCDS49560.2
    UniProtKB/TrEMBL
    M0QWK1, Q3V1V0
    Related
    ENSMUSP00000137875.2, ENSMUST00000181969.8
    Conserved Domains (1) summary
    cl21474
    Location:233300
    ABC2_membrane; ABC-2 type transporter

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    105495975..105546732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001781167.3 RNA Sequence

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